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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFJ234
Library CF
(Link to library)
Clone ID CFJ234
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16517-1
Original site URL
Representative seq. ID CFJ234P
(Link to Original site)
Representative DNA sequence 
>CFJ234 (CFJ234Q) /CSM/CF/CFJ2-B/CFJ234Q.Seq.d/
GTGAAAAAAACAAAAAAACAAAATAAAAAAAAGAAAGAGATAGAAAATAAAAAATGAGTG
GGAAGCAAATGGATGTTATTGCATCCATCCAAGAATATATAAATAAAATTCTCACAAATA
TTCAAGGCATGAAAGTTTTAGTTTTAGATAAAGAAACTGCAGGTATAGTGAGTATGGTTT
ATACACAATCAGAAATTTTACAAAAAGAAGTATTCTTATTTGAAAAGATTGAAAACACAA
AAGAAAAAATGTTACATATGAAAGGTGTATATTTTATCAGACCAACACAAGAAAATATTC
AATCAATTTGTGATGAATTAAAAGACCCAAAATTTAATAAATATCATTTATTTTTTACAA
ATACAATTTCAAAAGTTTCATTAGATGAAATTGCAAAAGCAGATGAACAAGATGTAGTAT
CAGAGATTCAAGAATATTTCGGAGACTTTTTCGCAGTTAATCCAGATACATTCACATTGA
ATTTACCAGGAATGTTAACAAAGAAATCACCAAGATGGCAGGGTGATGTTGGCAGAGTTG
TCGATGGATTATTCTCAAGTTTATTAGCATTGAAAAAGAAACCTGTAATXXXXXXXXXXA
ATTCTCAAACTACTGTATCAAAACATGTTTCGTTAATGGATGAATTAAATAGATTAATTT
CATTAGATAATTTAATGGAGGTATCAGAGGTACAACAAGAATTAGCATGTAATCATGATC
ATAACAGTATTTATAATCATGTTTTAGAAATTGTAAATGATTCAAAATATACTGATAGAG
ATAAATTAGTATTAGTACTTTTATATAGTATTAGATATGAAGATGGTAGAGTTTGGGAAT
TAAAAGAAAAATTATCAAGTATTGGTATTCCTCCAAAAGAAATTGGTTTAATTGATACAT
TAAGAGGATATGCAGGTGCAAGTTTAAGAGAAGGTGATTTATTAGGAACTAAAAATATTT
TTTCATTTGCAAGAAGTGTTGTTAAACGTGGTTTACAAGGTGTTTCAAATATTTATACTC
AACATAAACCATTATTACATGATATTTTAGATAGTATTTTAAAGAACAAATTAAAAGAAA
CCTCTTATCCATACTTATCAACAACTCAATCAAGAGAGAGACCACAAGATGTAATTATAT
TTATGGTTGGTGGTATCACTTATGAAGAGGCATTAACCGTTTACACTTTTAATTCTTTAA
ATACTGGTGTTTGTCGTGTTGTATTAGGTGGTACTTCAATTTTAAATCGTGAACAATTTT
TAGAAGATTTATCAAGTACTCAAATTTCTAATCCTNCTAGTAGTAGG
sequence update 2001.11.22
Translated Amino Acid sequence 
eknkktk*kkerdrk*KMSGKQMDVIASIQEYINKILTNIQGMKVLVLDKETAGIVSMVY
TQSEILQKEVFLFEKIENTKEKMLHMKGVYFIRPTQENIQSICDELKDPKFNKYHLFFTN
TISKVSLDEIAKADEQDVVSEIQEYFGDFFAVNPDTFTLNLPGMLTKKSPRWQGDVGRVV
DGLFSSLLALKKKPV---

---NSQTTVSKHVSLMDELNRLISLDNLMEVSEVQQELACNHDHNSIYNHVLEIVNDSKY
TDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGIPPKEIGLIDTLRGYAGASLREGDLLGT
KNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQD
VIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQISNPXSSR
Translated Amino Acid sequence (All Frames) 
Frame A:
vkktkkqnkkkkeienkk*vgskwmllhpskni*ikfsqifka*kf*f*ikklqv**vwf
ihnqkfykkkysylkrlktqkkkcyi*kvyilsdqhkkifnqfvmn*ktqnliniiyflq
iqfqkfh*mklqkqmnkm*yqrfknisetfsqliqihsh*iyqec*qrnhqdgrvmlael
smdysqvy*h*krnl*---

---NSQTTVSKHVSLMDELNRLISLDNLMEVSEVQQELACNHDHNSIYNHVLEIVNDSKY
TDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGIPPKEIGLIDTLRGYAGASLREGDLLGT
KNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQD
VIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQISNPXSSR

Frame B:
*kkqknkikkrkr*kikneweangcycihpriyk*nshkysrhesfsfr*rncryseygl
ytirnftkrsili*kd*khkrknvtyercifyqtntrkysinl**ikrpki**isfifyk
ynfksfir*ncksr*trcsirdsrifrrlfrs*sryihieftrnvnkeitkmag*cwqsc
rwiilkfisieketcn---

---ilkllyqnmfr*wmn*id*fh*ii*wryqrynkn*hvimiitvfiimf*kl*miqni
liein*y*yfyivldmkmvefgn*kknyqvlvflqkklv*lih*edmqvqv*ekviy*el
kiffhlqevllnvvykvfqifilninhyymif*ivf*rtn*kkplihtyqqlnqerdhkm
*lylwlvvslmkrh*pftllil*ilvfvvly*vvlqf*ivnnf*kiyqvlkflillvv

Frame C:
eknkktk*kkerdrk*KMSGKQMDVIASIQEYINKILTNIQGMKVLVLDKETAGIVSMVY
TQSEILQKEVFLFEKIENTKEKMLHMKGVYFIRPTQENIQSICDELKDPKFNKYHLFFTN
TISKVSLDEIAKADEQDVVSEIQEYFGDFFAVNPDTFTLNLPGMLTKKSPRWQGDVGRVV
DGLFSSLLALKKKPV---

---fsnyciktcfvng*ik*infir*fnggirgttrism*s*s*qyl*scfrnck*fkiy
**r*isistfi*y*i*rw*slgikrkiikywysskrnwfn*yikricrckfkrr*firn*
kyffickkcc*twftrcfkylyst*tiit*yfr*yfkeqikrnllsilinnsikrettrc
nyiygwwyhl*rginrlhf*ffkywclsccirwyfnfks*tifrrfikysnf*sx***
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ234 (CFJ234Q) /CSM/CF/CFJ2-B/CFJ234Q.Seq.d/                       2032   0.0
SFI855 (SFI855Q) /CSM/SF/SFI8-C/SFI855Q.Seq.d/                       1382   0.0
SFC628 (SFC628Q) /CSM/SF/SFC6-B/SFC628Q.Seq.d/                       1382   0.0
AFO808 (AFO808Q) /CSM/AF/AFO8-A/AFO808Q.Seq.d/                       1382   0.0
CHI228 (CHI228Q) /CSM/CH/CHI2-B/CHI228Q.Seq.d/                       1380   0.0
CFJ726 (CFJ726Q) /CSM/CF/CFJ7-B/CFJ726Q.Seq.d/                       1374   0.0
VHA223 (VHA223Q) /CSM/VH/VHA2-A/VHA223Q.Seq.d/                       1372   0.0
SFI755 (SFI755Q) /CSM/SF/SFI7-C/SFI755Q.Seq.d/                       1364   0.0
SFB696 (SFB696Q) /CSM/SF/SFB6-D/SFB696Q.Seq.d/                       1350   0.0
CHB225 (CHB225Q) /CSM/CH/CHB2-B/CHB225Q.Seq.d/                       1330   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           36   8e-09  26
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    34   6e-08  23
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   8e-08  22
AP004174|AP004174.1 Mycoplasma penetrans genomic DNA, complete sequence, section 5/5.    36   1e-07  16
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     38   2e-07  26
AP001118|AP001118.1 Buchnera sp. APS genomic DNA, complete sequence, segment 1/2.    38   3e-07  20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   3e-07  23
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    36   8e-07  18
AE015939|AE015939.1 Clostridium tetani E88, section 4 of 10 of the complete genome.    32   2e-06  20
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    36   6e-06  19
dna update 2003.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GE3) RecName: Full=Vacuolar protein sorting-associated prote...   454   e-126
AK295529_1(AK295529|pid:none) Homo sapiens cDNA FLJ54353 complet...   197   5e-49
AK223214_1(AK223214|pid:none) Homo sapiens mRNA for vacuolar pro...   196   1e-48
AJ133421_1(AJ133421|pid:none) Homo sapiens mRNA for leucocyte va...   196   1e-48
(Q9NRW7) RecName: Full=Vacuolar protein sorting-associated prote...   196   1e-48
AK146190_1(AK146190|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...   196   1e-48
BC123422_1(BC123422|pid:none) Bos taurus vacuolar protein sortin...   195   3e-48
BT045798_1(BT045798|pid:none) Salmo salar clone ssal-rgf-531-252...   192   3e-47
BC084162_1(BC084162|pid:none) Xenopus laevis hypothetical LOC495...   191   6e-47
AJ720470_1(AJ720470|pid:none) Gallus gallus mRNA for hypothetica...   190   1e-46
protein update 2009. 5.16
PSORT 

 psg: 0.73  gvh: 0.40  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFJ234 is cyt
5' end seq. ID CFJ234F
5' end seq. 
>CFJ234F.Seq
GTGAAAAAAACAAAAAAACAAAATAAAAAAAAGAAAGAGATAGAAAATAAAAAATGAGTG
GGAAGCAAATGGATGTTATTGCATCCATCCAAGAATATATAAATAAAATTCTCACAAATA
TTCAAGGCATGAAAGTTTTAGTTTTAGATAAAGAAACTGCAGGTATAGTGAGTATGGTTT
ATACACAATCAGAAATTTTACAAAAAGAAGTATTCTTATTTGAAAAGATTGAAAACACAA
AAGAAAAAATGTTACATATGAAAGGTGTATATTTTATCAGACCAACACAAGAAAATATTC
AATCAATTTGTGATGAATTAAAAGACCCAAAATTTAATAAATATCATTTATTTTTTACAA
ATACAATTTCAAAAGTTTCATTAGATGAAATTGCAAAAGCAGATGAACAAGATGTAGTAT
CAGAGATTCAAGAATATTTCGGAGACTTTTTCGCAGTTAATCCAGATACATTCACATTGA
ATTTACCAGGAATGTTAACAAAGAAATCACCAAGATGGCAGGGTGATGTTGGCAGAGTTG
TCGATGGATTATTCTCAAGTTTATTAGCATTGAAAAAGAAACCTGTAATNNNNNNNNNN
Length of 5' end seq. 599
3' end seq. ID CFJ234Z
3' end seq. 
>CFJ234Z.Seq
NNNNNNNNNNAATTCTCAAACTACTGTATCAAAACATGTTTCGTTAATGGATGAATTAAA
TAGATTAATTTCATTAGATAATTTAATGGAGGTATCAGAGGTACAACAAGAATTAGCATG
TAATCATGATCATAACAGTATTTATAATCATGTTTTAGAAATTGTAAATGATTCAAAATA
TACTGATAGAGATAAATTAGTATTAGTACTTTTATATAGTATTAGATATGAAGATGGTAG
AGTTTGGGAATTAAAAGAAAAATTATCAAGTATTGGTATTCCTCCAAAAGAAATTGGTTT
AATTGATACATTAAGAGGATATGCAGGTGCAAGTTTAAGAGAAGGTGATTTATTAGGAAC
TAAAAATATTTTTTCATTTGCAAGAAGTGTTGTTAAACGTGGTTTACAAGGTGTTTCAAA
TATTTATACTCAACATAAACCATTATTACATGATATTTTAGATAGTATTTTAAAGAACAA
ATTAAAAGAAACCTCTTATCCATACTTATCAACAACTCAATCAAGAGAGAGACCACAAGA
TGTAATTATATTTATGGTTGGTGGTATCACTTATGAAGAGGCATTAACCGTTTACACTTT
TAATTCTTTAAATACTGGTGTTTGTCGTGTTGTATTAGGTGGTACTTCAATTTTAAATCG
TGAACAATTTTTAGAAGATTTATCAAGTACTCAAATTTCTAATCCTNCTAGTAGTAGG
Length of 3' end seq. 718
Connected seq. ID CFJ234P
Connected seq. 
>CFJ234P.Seq
GTGAAAAAAACAAAAAAACAAAATAAAAAAAAGAAAGAGATAGAAAATAAAAAATGAGTG
GGAAGCAAATGGATGTTATTGCATCCATCCAAGAATATATAAATAAAATTCTCACAAATA
TTCAAGGCATGAAAGTTTTAGTTTTAGATAAAGAAACTGCAGGTATAGTGAGTATGGTTT
ATACACAATCAGAAATTTTACAAAAAGAAGTATTCTTATTTGAAAAGATTGAAAACACAA
AAGAAAAAATGTTACATATGAAAGGTGTATATTTTATCAGACCAACACAAGAAAATATTC
AATCAATTTGTGATGAATTAAAAGACCCAAAATTTAATAAATATCATTTATTTTTTACAA
ATACAATTTCAAAAGTTTCATTAGATGAAATTGCAAAAGCAGATGAACAAGATGTAGTAT
CAGAGATTCAAGAATATTTCGGAGACTTTTTCGCAGTTAATCCAGATACATTCACATTGA
ATTTACCAGGAATGTTAACAAAGAAATCACCAAGATGGCAGGGTGATGTTGGCAGAGTTG
TCGATGGATTATTCTCAAGTTTATTAGCATTGAAAAAGAAACCTGTAAT----------A
ATTCTCAAACTACTGTATCAAAACATGTTTCGTTAATGGATGAATTAAATAGATTAATTT
CATTAGATAATTTAATGGAGGTATCAGAGGTACAACAAGAATTAGCATGTAATCATGATC
ATAACAGTATTTATAATCATGTTTTAGAAATTGTAAATGATTCAAAATATACTGATAGAG
ATAAATTAGTATTAGTACTTTTATATAGTATTAGATATGAAGATGGTAGAGTTTGGGAAT
TAAAAGAAAAATTATCAAGTATTGGTATTCCTCCAAAAGAAATTGGTTTAATTGATACAT
TAAGAGGATATGCAGGTGCAAGTTTAAGAGAAGGTGATTTATTAGGAACTAAAAATATTT
TTTCATTTGCAAGAAGTGTTGTTAAACGTGGTTTACAAGGTGTTTCAAATATTTATACTC
AACATAAACCATTATTACATGATATTTTAGATAGTATTTTAAAGAACAAATTAAAAGAAA
CCTCTTATCCATACTTATCAACAACTCAATCAAGAGAGAGACCACAAGATGTAATTATAT
TTATGGTTGGTGGTATCACTTATGAAGAGGCATTAACCGTTTACACTTTTAATTCTTTAA
ATACTGGTGTTTGTCGTGTTGTATTAGGTGGTACTTCAATTTTAAATCGTGAACAATTTT
TAGAAGATTTATCAAGTACTCAAATTTCTAATCCTNCTAGTAGTAGG
Length of connected seq. 1297
Full length Seq ID -
Full length Seq. -
Length of full length seq. -