CFJ232
Library CF
(Link to library)
Clone ID CFJ232
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15540-1
Original site URL
Representative seq. ID CFJ232P
(Link to Original site)
Representative DNA sequence
>CFJ232 (CFJ232Q) /CSM/CF/CFJ2-B/CFJ232Q.Seq.d/
ACAACAACAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACAACAACA
ACGGCAACAATGGTGGTATGTTTAATGGAGGATTTGTTAACAATAACAACCATAATAATA
ATAACAACAACTACAACAACAACAACAATTACAACAACACCAACAACAACAACAACAATT
ACAACAACAACAATTACAACAACAATTTAATATTGGCAAACCATGTAACATTAATCAAAA
GAAAGGTAGAGGTGCTAATAATAATAATAACAACATGCCAATTGGTAATCAAGCAAGTTT
AGTTATTAGTCATCCTAGTTTAAAAATGGAAGGTCATCATCATTTACAACAACAACAACA
ACAACAACATCATCATCAACATCAACAACATCAACAAAATGGGAATGGTAATAATACACA
AATTGTAAATTCAGCATTCTTAGATTTATCATCACCAGATTCACATAATCAAATGTCACC
ATCATCACCAATTTGTTTACCAGAAAGTCCAATGGGTGCTCAACATTGGGAGAGTGGTXX
XXXXXXXXTAATTCACCAATTTCCGTTCGTTCCAATGTCGTTTTCTTTGAACCATACTTG
GCCGGTGAACCAGGCAGACACAAGGCATGTTGGAATCTCCTCGAACCAATGCATAGAAAC
TACTACCAACCAATCCAATTCAAATTACCATCATTCCCAGACACCTCATTACCAATCACA
CAAATCGATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCA
CAAGCCATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGT
GGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGAT
GGCAATGTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATAT
TATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTC
AAAAATAACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATG
TGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCCA
CTCACAAATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAAGGAAAAAAT
CAGTTCCAAATAAATCGAAAAAACAAAGATTNAATAAATAATTAATAATAAAATAA
sequence update 2001.11.22
Translated Amino Acid sequence
qqqqqqqq****qqqqqqqqrqqwwyv*wric*q*qp****QQLQQQQQLQQHQQQQQQL
QQQQLQQQFNIGKPCNINQKKGRGANNNNNNMPIGNQASLVISHPSLKMEGHHHLQQQQQ
QQHHHQHQQHQQNGNGNNTQIVNSAFLDLSSPDSHNQMSPSSPICLPESPMGAQHWESG-
--

---NSPISVRSNVVFFEPYLAGEPGRHKACWNLLEPMHRNYYQPIQFKLPSFPDTSLPIT
QIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKALILD
GNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDGGFTLSLKPM
CCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQGKNQFQINRKNKDXINN***n


Translated Amino Acid sequence (All Frames)
Frame A:
ttttttttiviittttattttatmvvclmedlltittiiiittttttttitttpttttti
ttttittti*ywqtm*h*sker*rc*****qhanw*sskfsy*ss*fkngrsssfttttt
tttssststtstkwew**ytnckfsilrfiitrft*snvtiitnlftrksngcstlgew-
--

---*ftnfrsfqcrfl*tilgr*trqtqgmlesprtna*kllptnpiqitiiprhlitnh
tnr**nryl*fstfpriq*stshe*i*ilsylhssftrlqw*ckeiqtttrcq*esfdfg
wqclrwtfksnlql*nlyrilsnqillfr*stckr*ssfgqk*hinscqrwwfhsllkan
vlqws*lsyptllslypyksthk*sctpith*c*c*arkksvpnkskkqrxnk*liik*

Frame B:
qqqqqqqq****qqqqqqqqrqqwwyv*wric*q*qp****QQLQQQQQLQQHQQQQQQL
QQQQLQQQFNIGKPCNINQKKGRGANNNNNNMPIGNQASLVISHPSLKMEGHHHLQQQQQ
QQHHHQHQQHQQNGNGNNTQIVNSAFLDLSSPDSHNQMSPSSPICLPESPMGAQHWESG-
--

---NSPISVRSNVVFFEPYLAGEPGRHKACWNLLEPMHRNYYQPIQFKLPSFPDTSLPIT
QIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKALILD
GNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDGGFTLSLKPM
CCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQGKNQFQINRKNKDXINN***n

Frame C:
nnnnnnnnsnnnnnnsnnnngnnggmfnggfvnnnnhnnnnnnynnnnnynntnnnnnny
nnnnynnnlilanhvtlikrkvevliiiittcqlvikqv*llvilv*kwkviiiynnnnn
nniiininninkmgmviihkl*iqhs*iyhhqihiikchhhhqfvyqkvqwvlnigrv--
-

---ihqfpfvpmsfslnhtwpvnqadtrhvgissnqcietttnqsnsnyhhsqtphyqsh
ksmikpvslilnvsshsiihkp*vnmnpivstfilhsvtvvmqrdsnnnqmsmrkl*fwm
amstmdi*iqfttvksvpniikpnltfplihmqkvkffwskity*lvskmvvslsp*sqc
vavvitlishstftlplqihsqmklysnhslmlmlskekissk*iektkix*iinnki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFJ232 (CFJ232Q) /CSM/CF/CFJ2-B/CFJ232Q.Seq.d/ 1516 0.0
VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/ 1261 0.0
CHR159 (CHR159Q) /CSM/CH/CHR1-C/CHR159Q.Seq.d/ 1261 0.0
VFA838 (VFA838Q) /CSM/VF/VFA8-B/VFA838Q.Seq.d/ 1259 0.0
AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/ 1259 0.0
CHD534 (CHD534Q) /CSM/CH/CHD5-B/CHD534Q.Seq.d/ 1253 0.0
CHO693 (CHO693Q) /CSM/CH/CHO6-D/CHO693Q.Seq.d/ 1245 0.0
SHL560 (SHL560Q) /CSM/SH/SHL5-C/SHL560Q.Seq.d/ 1207 0.0
SHA665 (SHA665Q) /CSM/SH/SHA6-C/SHA665Q.Seq.d/ 1172 0.0
SHJ550 (SHJ550Q) /CSM/SH/SHJ5-C/SHJ550Q.Seq.d/ 1154 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ277590|AJ277590.1 Dictyostelium discoideum iplA gene for inositol 1,4,5-trisphosphate receptor-like protein (IplA), exons 1-4. 36 0.001 5
BG785337|BG785337.1 SEAUMC005294 Sea urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PC_0025_B1_D07_MR 5', mRNA sequence. 40 0.002 2
AC013177|AC013177.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 42 0.003 5
AC007257|AC007257.9 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR24A22, complete sequence. 42 0.004 5
AY044086|AY044086.1 Dictyostelium discoideum Rho GDP-dissociation inhibitor-like protein (rdiB) gene, complete cds; and unknown gene. 38 0.012 3
AE003625|AE003625.2 Drosophila melanogaster chromosome 2L section 34 of 83 of the complete sequence. 42 0.014 5
AF362369|AF362369.2 Dictyostelium discoideum histidine kinase DhkG (dhkG) gene, complete cds. 40 0.015 4
AC115578|AC115578.2 Dictyostelium discoideum chromosome 2 map complement(5018024-5005561) strain AX4, complete sequence. 40 0.021 4
BX216344|BX216344.1 Danio rerio genomic clone DKEY-256J23, genomic survey sequence. 40 0.025 2
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 40 0.027 4
dna update 2003.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115604_15(AC115604|pid:none) Dictyostelium discoideum chromoso... 37 1.4
AM269894_32(AM269894|pid:none) Eimeria tenella chromosome 1, ord... 29 4.9
BA000040_1129(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 35 7.1
AF128626_1(AF128626|pid:none) Dictyostelium discoideum RNA bindi... 35 7.1
BT073025_1(BT073025|pid:none) Oncorhynchus mykiss clone omyk-evn... 34 9.2
BT047510_1(BT047510|pid:none) Salmo salar clone ssal-evd-578-123... 34 9.2
BT073577_1(BT073577|pid:none) Oncorhynchus mykiss clone omyk-evn... 34 9.2
AF438165_8(AF438165|pid:none) Camelpox virus M-96 from Kazakhsta... 34 9.2
BT074070_1(BT074070|pid:none) Oncorhynchus mykiss clone omyk-evo... 34 9.2
BT056394_1(BT056394|pid:none) Salmo salar clone ssal-evd-520-220... 34 9.2
protein update 2009. 5.16
PSORT

psg: 0.63 gvh: 0.21 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for CFJ232 is nuc

5' end seq. ID CFJ232F
5' end seq.
>CFJ232F.Seq
ACAACAACAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACAACAACA
ACGGCAACAATGGTGGTATGTTTAATGGAGGATTTGTTAACAATAACAACCATAATAATA
ATAACAACAACTACAACAACAACAACAATTACAACAACACCAACAACAACAACAACAATT
ACAACAACAACAATTACAACAACAATTTAATATTGGCAAACCATGTAACATTAATCAAAA
GAAAGGTAGAGGTGCTAATAATAATAATAACAACATGCCAATTGGTAATCAAGCAAGTTT
AGTTATTAGTCATCCTAGTTTAAAAATGGAAGGTCATCATCATTTACAACAACAACAACA
ACAACAACATCATCATCAACATCAACAACATCAACAAAATGGGAATGGTAATAATACACA
AATTGTAAATTCAGCATTCTTAGATTTATCATCACCAGATTCACATAATCAAATGTCACC
ATCATCACCAATTTGTTTACCAGAAAGTCCAATGGGTGCTCAACATTGGGAGAGTGGTNN
NNNNNNNN
Length of 5' end seq. 548
3' end seq. ID CFJ232Z
3' end seq.
>CFJ232Z.Seq
NNNNNNNNNNTAATTCACCAATTTCCGTTCGTTCCAATGTCGTTTTCTTTGAACCATACT
TGGCCGGTGAACCAGGCAGACACAAGGCATGTTGGAATCTCCTCGAACCAATGCATAGAA
ACTACTACCAACCAATCCAATTCAAATTACCATCATTCCCAGACACCTCATTACCAATCA
CACAAATCGATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATC
CACAAGCCATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACA
GTGGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGG
ATGGCAATGTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAAT
ATTATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGG
TCAAAAATAACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAA
TGTGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATC
CACTCACAAATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAAGGAAAAA
ATCAGTTCCAAATAAATCGAAAAAACAAAGATTNAATAAATAATTAATAATAAAATAA
Length of 3' end seq. 718
Connected seq. ID CFJ232P
Connected seq.
>CFJ232P.Seq
ACAACAACAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACAACAACA
ACGGCAACAATGGTGGTATGTTTAATGGAGGATTTGTTAACAATAACAACCATAATAATA
ATAACAACAACTACAACAACAACAACAATTACAACAACACCAACAACAACAACAACAATT
ACAACAACAACAATTACAACAACAATTTAATATTGGCAAACCATGTAACATTAATCAAAA
GAAAGGTAGAGGTGCTAATAATAATAATAACAACATGCCAATTGGTAATCAAGCAAGTTT
AGTTATTAGTCATCCTAGTTTAAAAATGGAAGGTCATCATCATTTACAACAACAACAACA
ACAACAACATCATCATCAACATCAACAACATCAACAAAATGGGAATGGTAATAATACACA
AATTGTAAATTCAGCATTCTTAGATTTATCATCACCAGATTCACATAATCAAATGTCACC
ATCATCACCAATTTGTTTACCAGAAAGTCCAATGGGTGCTCAACATTGGGAGAGTGGT--
--------TAATTCACCAATTTCCGTTCGTTCCAATGTCGTTTTCTTTGAACCATACTTG
GCCGGTGAACCAGGCAGACACAAGGCATGTTGGAATCTCCTCGAACCAATGCATAGAAAC
TACTACCAACCAATCCAATTCAAATTACCATCATTCCCAGACACCTCATTACCAATCACA
CAAATCGATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCA
CAAGCCATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGT
GGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGAT
GGCAATGTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATAT
TATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTC
AAAAATAACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATG
TGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCCA
CTCACAAATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAAGGAAAAAAT
CAGTTCCAAATAAATCGAAAAAACAAAGATTNAATAAATAATTAATAATAAAATAA
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -