CFJ218
Library CF
(Link to library)
Clone ID CFJ218
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFJ218 (CFJ218Q) /CSM/CF/CFJ2-A/CFJ218Q.Seq.d/
XXXXXXXXXXAAGAAAACTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTAT
ATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGT
TCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATT
ACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCA
ATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAA
TGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAA
GATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGAT
AATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTAT
TGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCA
AAG
sequence update 2001.11.22
Translated Amino Acid sequence
---ENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNIT
AGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKD
DEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSK


Translated Amino Acid sequence (All Frames)
Frame A:
---rklwl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*i*ywcnh*rlc*hy
crfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfscwlwcsr*r
**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnvk


Frame B:
---ENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNIT
AGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKD
DEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSK


Frame C:
---ktlvvmvv**imhliislktrvltlkvvihillklvqhvysinlilvqplkvmltll
pvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*llvmvfkvkm
mkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*kvtf*cq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/ 1057 0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/ 1057 0.0
SFL242 (SFL242Q) /CSM/SF/SFL2-B/SFL242Q.Seq.d/ 1057 0.0
SFK574 (SFK574Q) /CSM/SF/SFK5-D/SFK574Q.Seq.d/ 1057 0.0
SFJ429 (SFJ429Q) /CSM/SF/SFJ4-B/SFJ429Q.Seq.d/ 1057 0.0
SFI602 (SFI602Q) /CSM/SF/SFI6-A/SFI602Q.Seq.d/ 1057 0.0
SFG645 (SFG645Q) /CSM/SF/SFG6-B/SFG645Q.Seq.d/ 1057 0.0
SFG577 (SFG577Q) /CSM/SF/SFG5-D/SFG577Q.Seq.d/ 1057 0.0
SFE650 (SFE650Q) /CSM/SF/SFE6-C/SFE650Q.Seq.d/ 1057 0.0
SFC863 (SFC863Q) /CSM/SF/SFC8-C/SFC863Q.Seq.d/ 1057 0.0

own update 2002. 7. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 1057 0.0 1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 961 0.0 2
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read. 595 0.0 2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 88 3e-46 5
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 70 2e-45 5
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 88 1e-34 6
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 82 5e-15 2
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds. 56 3e-12 3
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds. 46 2e-11 4
BQ834906|BQ834906.1 Po_ad_04H08_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_04H08 5' similar to O46030 CYSTEINE PROTEINASE. Sitophilus zeamais (maize weevil), mRNA sequence. 50 2e-06 3
dna update 2003.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 351 6e-96
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 189 4e-47
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 189 4e-47
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 172 4e-42
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 171 1e-41
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li... 168 9e-41
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ... 165 8e-40
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,... 165 8e-40
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot... 164 1e-39
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae... 164 2e-39
protein update 2009. 5.16
PSORT

psg: 0.75 gvh: 0.27 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.09 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CFJ218 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFJ218Z
3' end seq.
>CFJ218Z.Seq
NNNNNNNNNNAAGAAAACTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTAT
ATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGT
TCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATT
ACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCA
ATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAA
TGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAA
GATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGAT
AATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTAT
TGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCA
AAG
Length of 3' end seq. 543
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -