>CFJ215 (CFJ215Q) /CSM/CF/CFJ2-A/CFJ215Q.Seq.d/
XXXXXXXXXXAAGATGTTAAAGGAATTTCAGAAGCTTTGGATAAATTTGAAAAAGAAACC
GGACTTGATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTT
CAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGT
CATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGAC
ATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCA
TTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCAT
GGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCC
AAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCA
GGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCA
GATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGAT
ATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATG

---DVKGISEALDKFEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGH
KFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHG
RSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSD
RMRNRGWQIASYTLPNLPDIVVQRVLIRHGFSHDMAM

Frame A:
---rc*rnfrsfg*i*krnrt*ytnscrcskwwfrctlsstrnclgf*tttc*in*wlws
*iwsisigswlgrmer*k*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapw
s*wiyrsssslsrswyfhfqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr
*nek*rlancilystkltrycssksin*twfqs*ygn


Frame B:
---DVKGISEALDKFEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGH
KFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHG
RSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSD
RMRNRGWQIASYTLPNLPDIVVQRVLIRHGFSHDMAM


Frame C:
---mlkefqklwinlkkkpdliyqfmsmqqvvvslhpffnqklfgildyhvlnqlmalvi
nlvylhwelagsygevkmtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamv
vvdipqfiklv*imvfsfpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqi
e*eievgklhpilyqtyqil*fkey*ldmvsvmiwq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1277   0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/                       1277   0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/                       1277   0.0
CFJ215 (CFJ215Q) /CSM/CF/CFJ2-A/CFJ215Q.Seq.d/                       1277   0.0
CFJ364 (CFJ364Q) /CSM/CF/CFJ3-C/CFJ364Q.Seq.d/                       1269   0.0
SFE561 (SFE561Q) /CSM/SF/SFE5-C/SFE561Q.Seq.d/                       1265   0.0
SFF524 (SFF524Q) /CSM/SF/SFF5-A/SFF524Q.Seq.d/                       1255   0.0
CFE515 (CFE515Q) /CSM/CF/CFE5-A/CFE515Q.Seq.d/                       1255   0.0
CFA210 (CFA210Q) /CSM/CF/CFA2-A/CFA210Q.Seq.d/                       1255   0.0
SFG754 (SFG754Q) /CSM/SF/SFG7-C/SFG754Q.Seq.d/                       1253   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    66   9e-10  2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    58   2e-07  2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    64   4e-07  2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    64   4e-07  2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    64   5e-07  2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence.    64   6e-07  2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence.    64   6e-07  2
AW622257|AW622257.1 EST313055 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14P1 5', mRNA sequence.    66   6e-07  1
CF514038|CF514038.1 CAbud0007_IVF_G07 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0007_IVF_G07 5', mRNA sequence.    64   3e-06  1
CB910900|CB910900.1 VVD157G07_379711 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVD157G07 5, mRNA sequence.    64   3e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   317   2e-85
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   314   2e-84
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   308   1e-82
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   308   1e-82
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   303   3e-81
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   296   4e-79
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   288   7e-77
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   288   9e-77
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   285   8e-76
CP000937_903(CP000937|pid:none) Francisella philomiragia subsp. ...   285   1e-75

 psg: 0.75  gvh: 0.40  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CFJ215 is nuc

>CFJ215Z.Seq
NNNNNNNNNNAAGATGTTAAAGGAATTTCAGAAGCTTTGGATAAATTTGAAAAAGAAACC
GGACTTGATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTT
CAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGT
CATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGAC
ATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCA
TTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCAT
GGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCC
AAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCA
GGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCA
GATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGAT
ATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATG