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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFJ213
Library CF
(Link to library)
Clone ID CFJ213
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16561-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFJ213 (CFJ213Q) /CSM/CF/CFJ2-A/CFJ213Q.Seq.d/
XXXXXXXXXXGGTAAGACTATTACACTNGAAAGTTGAAGGTAGTGNCAACATTGAGAATG
TAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTNTCATTTCGCT
GGTAANCAATTAAAAAGATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCAAC
TCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGG
TAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGAT
TCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATT
AGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGT
CCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTAC
ACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGA
AGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCG
TACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAG
AGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGA
AGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGANGG
sequence update 2001.11.22
Translated Amino Acid sequence 
---ktitles*r*xqh*ecktkiqdkegippdqqrxislvxn*KDGRTLSDYNIQKESTL
HLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGIPPDQQRLIFAGKQLE
DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEG
IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEG
SDNIENVKTKIQDKX
Translated Amino Acid sequence (All Frames) 
Frame A:
---vrllhxkvegsxnienvkqrfkikkvfhqinnvsfrw*xikkmvvlslitiskknql
stwssd*evvckslskh*lvrpsllklraqiilkmlkqrfktkkvshqtnkd*fslvnn*
kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkk
vfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklk
vvttlrm*kqkfktkx


Frame B:
---*dyytxklkvvxtlrm*nkdsr*rrystrsttxhfagxqlkrwsysl*lqypkrins
plgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrptkinfrw*tir
rwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrr
ystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r
**qh*ecknknsrqrx


Frame C:
---ktitles*r*xqh*ecktkiqdkegippdqqrxislvxn*KDGRTLSDYNIQKESTL
HLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGIPPDQQRLIFAGKQLE
DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEG
IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEG
SDNIENVKTKIQDKX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ213 (CFJ213Q) /CSM/CF/CFJ2-A/CFJ213Q.Seq.d/                       1479   0.0
CFA741 (CFA741Q) /CSM/CF/CFA7-B/CFA741Q.Seq.d/                       1417   0.0
CFK312 (CFK312Q) /CSM/CF/CFK3-A/CFK312Q.Seq.d/                       1413   0.0
CFJ655 (CFJ655Q) /CSM/CF/CFJ6-C/CFJ655Q.Seq.d/                       1409   0.0
AFG624 (AFG624Q) /CSM/AF/AFG6-A/AFG624Q.Seq.d/                       1409   0.0
CFJ521 (CFJ521Q) /CSM/CF/CFJ5-A/CFJ521Q.Seq.d/                       1405   0.0
CFF858 (CFF858Q) /CSM/CF/CFF8-C/CFF858Q.Seq.d/                       1405   0.0
CFC756 (CFC756Q) /CSM/CF/CFC7-C/CFC756Q.Seq.d/                       1402   0.0
CFH301 (CFH301Q) /CSM/CF/CFH3-A/CFH301Q.Seq.d/                       1398   0.0
CFI731 (CFI731Q) /CSM/CF/CFI7-B/CFI731Q.Seq.d/                       1396   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1249   0.0    5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1233   0.0    5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1233   0.0    5
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   718   0.0    5
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   660   0.0    4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   597   0.0    3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   597   0.0    3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   644   0.0    4
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read.   192   e-102  5
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      170   e-100  4
dna update 2003.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   444   e-123
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   444   e-123
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   444   e-123
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   439   e-122
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   429   e-119
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   427   e-118
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019...   426   e-118
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   425   e-118
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   425   e-118
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   425   e-118
protein update 2009. 5.16
PSORT 

 psg: 0.53  gvh: 0.44  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 1.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CFJ213 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFJ213Z
3' end seq. 
>CFJ213Z.Seq
NNNNNNNNNNGGTAAGACTATTACACTNGAAAGTTGAAGGTAGTGNCAACATTGAGAATG
TAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTNTCATTTCGCT
GGTAANCAATTAAAAAGATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCAAC
TCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGG
TAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGAT
TCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATT
AGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGT
CCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTAC
ACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGA
AGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCG
TACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAG
AGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGA
AGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGANGG
Length of 3' end seq. 771
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -