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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFJ208
Library CF
(Link to library)
Clone ID CFJ208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16309-1
Original site URL
Representative seq. ID CFJ208E
(Link to Original site)
Representative DNA sequence 
>CFJ208 (CFJ208Q) /CSM/CF/CFJ2-A/CFJ208Q.Seq.d/
GGATAATTCATTAACTATTAATTAAACAAACATTGATTTAAATATAGTTATATAATATAA
GAAAGAGTAATATTCTTTAAAAAATGGCCATTGACAAAGATTCATCTAAAAGACCGGCTA
ATACCGCATTTAAACAACAAAGATTAAAAGCATGGGAACCAATTTTAACACCAGGACCAG
TAATTATTGCATTTATTGTTATTGGTATTGTTTTTATACCAATTGGAGCAGCAATTATCA
ATTCATCAAATAAGGTGTTAGAACATGTAATTAGATATGACGATAATCCAAATTGTCAAT
TAGGACAAAAATGTACAATTAATTATACACTCCCAACTGAAATGGAATCACCAGTTTATT
TGTATTATAAATTGGATAACTTTTATCAAAACCATCGTAGATATGTAAAATCAAGAAATG
ATGATCAACTTAGAGGTATTGAAGTAACAGATTTCAGTAAATTAAAGGATTGTGAACCAT
TAATTACAACTGATGGTTCTGAAGATGTTAATAAGATTTTAGTTCCATGTGGTTTAATTG
CAAATAGTGTTTTTAATGATTCAATTTCATTAGCAGATGCTTCAGGTAATTTAATAAATT
TAACCAAAAAAGGTATTGCATGGCAATCAGATATTGATAAGAAGTTTAAAAATTACCCAG
AGAATGGTGTAGGTGTAATTAATTTTTCAAATTTTGAAGATGAAGATTTCATTGTTTGGA
TGAGAACTGCTGCTTTACCAGATTTTAAAAAACTTTACAGAATTTATCATGGTCAAAATG
GTCCATTGAGTGGTACCATTCAAATTAGAATTGATAATAAATACCCAGTTGCTTCATTTG
ATGGTAAAAAATATGTAGTTTTATCAACAACTTCATGGATTGGTGGTAAAAATCCATTTT
TAGGTTATGCTTACATTATTGTTGGTATTATTTGTTTCGTTCAAGGTGTCGTAT
sequence update 2001.11.24
Translated Amino Acid sequence 
iih*llikqtli*i*lynirksnil*KMAIDKDSSKRPANTAFKQQRLKAWEPILTPGPV
IIAFIVIGIVFIPIGAAIINSSNKVLEHVIRYDDNPNCQLGQKCTINYTLPTEMESPVYL
YYKLDNFYQNHRRYVKSRNDDQLRGIEVTDFSKLKDCEPLITTDGSEDVNKILVPCGLIA
NSVFNDSISLADASGNLINLTKKGIAWQSDIDKKFKNYPENGVGVINFSNFEDEDFIVWM
RTAALPDFKKLYRIYHGQNGPLSGTIQIRIDNKYPVASFDGKKYVVLSTTSWIGGKNPFL
GYAYIIVGIICFVQGVV
Translated Amino Acid sequence (All Frames) 
Frame A:
g*finy*lnkh*fkysyii*erviffkkwpltkihlkdrliphlnnkd*khgnqf*hqdq
*llhllllvlflyqleqqlsihqirc*nm*ldmtiiqivn*dknvqliihsqlkwnhqfi
ciinwitfiktivdm*nqemminlevlk*qisvn*rivnh*lqlmvlkmlirf*fhvv*l
qivflmiqfh*qmlqvi**i*pkkvlhgnqilirslkitqrmv*v*lifqilkmkislfg
*elllyqilknftefimvkmvh*vvpfkleliintqllhlmvknm*fyqqlhglvvkihf
*vmltlllvlfvsfkvsy


Frame B:
dnsltin*tnidlnivi*ykke*yslkngh*qrfi*ktg*yri*ttkiksmgtnfntrts
nyciycywycfytnwssnyqfik*gvrtcn*i*r*sklsirtkmyn*lytpn*ngitslf
vl*ig*llskps*ickikk**st*ry*snrfq*ikgl*tinyn*wf*rc**dfssmwfnc
k*cf**fnfisrcfr*fnkfnqkrycmairy**ev*klprewcrcn*ffkf*r*rfhcld
enccftrf*ktlqnlswskwsiewyhsn*n***ipscfi*w*kicsfinnfmdww*ksif
rlclhycwyylfrsrcr


Frame C:
iih*llikqtli*i*lynirksnil*KMAIDKDSSKRPANTAFKQQRLKAWEPILTPGPV
IIAFIVIGIVFIPIGAAIINSSNKVLEHVIRYDDNPNCQLGQKCTINYTLPTEMESPVYL
YYKLDNFYQNHRRYVKSRNDDQLRGIEVTDFSKLKDCEPLITTDGSEDVNKILVPCGLIA
NSVFNDSISLADASGNLINLTKKGIAWQSDIDKKFKNYPENGVGVINFSNFEDEDFIVWM
RTAALPDFKKLYRIYHGQNGPLSGTIQIRIDNKYPVASFDGKKYVVLSTTSWIGGKNPFL
GYAYIIVGIICFVQGVV
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ208 (CFJ208Q) /CSM/CF/CFJ2-A/CFJ208Q.Seq.d/                       1891   0.0
SFH355 (SFH355Q) /CSM/SF/SFH3-C/SFH355Q.Seq.d/                       1887   0.0
SFD624 (SFD624Q) /CSM/SF/SFD6-A/SFD624Q.Seq.d/                       1887   0.0
CHD343 (CHD343Q) /CSM/CH/CHD3-B/CHD343Q.Seq.d/                       1887   0.0
CFK419 (CFK419Q) /CSM/CF/CFK4-A/CFK419Q.Seq.d/                       1887   0.0
CFK319 (CFK319Q) /CSM/CF/CFK3-A/CFK319Q.Seq.d/                       1887   0.0
SFI320 (SFI320Q) /CSM/SF/SFI3-A/SFI320Q.Seq.d/                       1879   0.0
SFJ627 (SFJ627Q) /CSM/SF/SFJ6-B/SFJ627Q.Seq.d/                       1873   0.0
SFC413 (SFC413Q) /CSM/SF/SFC4-A/SFC413Q.Seq.d/                       1873   0.0
CFI706 (CFI706Q) /CSM/CF/CFI7-A/CFI706Q.Seq.d/                       1871   0.0
own update 2002.11.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.   860   0.0    8
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           38   8e-11  25
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    40   8e-10  15
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    32   1e-06  12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   2e-06  20
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     32   8e-06  23
AX344550|AX344550.1 Sequence 1 from Patent WO0200932.              38   1e-05  16
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    40   1e-05  8
CD917355|CD917355.1 G608.105A08F010906 G608 Triticum aestivum cDNA clone G608105A08, mRNA sequence.    56   2e-05  2
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   2e-05  12
dna update 2003.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063271_1(BC063271|pid:none) Xenopus laevis hypothetical protei...   226   9e-58
(Q5F362) RecName: Full=Cell cycle control protein 50A; AltName: ...   225   2e-57
BC061349_1(BC061349|pid:none) Xenopus tropicalis C6orf67-like pr...   224   3e-57
BC065436_1(BC065436|pid:none) Danio rerio zgc:77655, mRNA (cDNA ...   223   8e-57
AL935145_4(AL935145|pid:none) Zebrafish DNA sequence from clone ...   221   4e-56
BT045707_1(BT045707|pid:none) Salmo salar clone ssal-rgf-529-076...   219   1e-55
AY391412_1(AY391412|pid:none) Danio rerio C6orf67-like protein m...   218   3e-55
BC018491_1(BC018491|pid:none) Mus musculus transmembrane protein...   216   1e-54
AK150071_1(AK150071|pid:none) Mus musculus bone marrow macrophag...   214   5e-54
(Q8VEK0) RecName: Full=Cell cycle control protein 50A; AltName: ...   213   8e-54
protein update 2009. 7. 1
PSORT 

 psg: 0.65  gvh: 0.54  alm: 0.13  top: 0.37  tms: 0.13  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for CFJ208 is end
5' end seq. ID CFJ208F
5' end seq. 
>CFJ208F.Seq
GGATAATTCATTAACTATTAATTAAACAAACATTGATTTAAATATAGTTATATAATATAA
GAAAGAGTAATATTCTTTAAAAAATGGCCATTGACAAAGATTCATCTAAAAGACCGGCTA
ATACCGCATTTAAACAACAAAGATTAAAAGCATGGGAACCAATTTTAACACCAGGACCAG
TAATTATTGCATTTATTGTTATTGGTATTGTTTTTATACCAATTGGAGCAGCAATTATCA
ATTCATCAAATAAGGTGTTAGAACATGTAATTAGATATGACGATAATCCAAATTGTCAAT
TAGGACAAAAATGTACAATTAATTATACACTCCCAACTGAAATGGAATCACCAGTTTATT
TGTATTATAAATTGGATAACTTTTATCAAAACCATCGTAGATATGTAAAATCAAGAAATG
ATGATCAACTTAGAGGTATTGAAGTAACAGATTTCAGTAAATTAAAGGATTGTGAACCAT
TAATTACAACTGATGGTTCTGAAGATGTTAATAAGATTTTAGTTCCATGTGGTTTAATTG
CAAATAGTGTTTTTAATGATTCAATTTCATTAGCAGATGCTTCAGGTAATTTAATNNNNN
NNNNN
Length of 5' end seq. 605
3' end seq. ID CFJ208Z
3' end seq. 
>CFJ208Z.Seq
NNNNNNNNNNGGAATCACCAGTTTATTTGTATTATAAATTGGATAACTTTTATCAAAACC
ATCGTAGATATGTAAAATCAAGAAATGATGATCAACTTAGAGGTATTGAAGTAACAGATT
TCAGTAAATTAAAGGATTGTGAACCATTAATTACAACTGATGGTTCTGAAGATGTTAATA
AGATTTTAGTTCCATGTGGTTTAATTGCAAATAGTGTTTTTAATGATTCAATTTCATTAG
CAGATGCTTCAGGTAATTTAATAAATTTAACCAAAAAAGGTATTGCATGGCAATCAGATA
TTGATAAGAAGTTTAAAAATTACCCAGAGAATGGTGTAGGTGTAATTAATTTTTCAAATT
TTGAAGATGAAGATTTCATTGTTTGGATGAGAACTGCTGCTTTACCAGATTTTAAAAAAC
TTTACAGAATTTATCATGGTCAAAATGGTCCATTGAGTGGTACCATTCAAATTAGAATTG
ATAATAAATACCCAGTTGCTTCATTTGATGGTAAAAAATATGTAGTTTTATCAACAACTT
CATGGATTGGTGGTAAAAATCCATTTTTAGGTTATGCTTACATTATTGTTGGTATTATTT
GTTTCGTTCAAGGTGTCGTAT
Length of 3' end seq. 621
Connected seq. ID CFJ208P
Connected seq. 
>CFJ208P.Seq
GGATAATTCATTAACTATTAATTAAACAAACATTGATTTAAATATAGTTATATAATATAA
GAAAGAGTAATATTCTTTAAAAAATGGCCATTGACAAAGATTCATCTAAAAGACCGGCTA
ATACCGCATTTAAACAACAAAGATTAAAAGCATGGGAACCAATTTTAACACCAGGACCAG
TAATTATTGCATTTATTGTTATTGGTATTGTTTTTATACCAATTGGAGCAGCAATTATCA
ATTCATCAAATAAGGTGTTAGAACATGTAATTAGATATGACGATAATCCAAATTGTCAAT
TAGGACAAAAATGTACAATTAATTATACACTCCCAACTGAAATGGAATCACCAGTTTATT
TGTATTATAAATTGGATAACTTTTATCAAAACCATCGTAGATATGTAAAATCAAGAAATG
ATGATCAACTTAGAGGTATTGAAGTAACAGATTTCAGTAAATTAAAGGATTGTGAACCAT
TAATTACAACTGATGGTTCTGAAGATGTTAATAAGATTTTAGTTCCATGTGGTTTAATTG
CAAATAGTGTTTTTAATGATTCAATTTCATTAGCAGATGCTTCAGGTAATTTAAT-----
-----GGAATCACCAGTTTATTTGTATTATAAATTGGATAACTTTTATCAAAACCATCGT
AGATATGTAAAATCAAGAAATGATGATCAACTTAGAGGTATTGAAGTAACAGATTTCAGT
AAATTAAAGGATTGTGAACCATTAATTACAACTGATGGTTCTGAAGATGTTAATAAGATT
TTAGTTCCATGTGGTTTAATTGCAAATAGTGTTTTTAATGATTCAATTTCATTAGCAGAT
GCTTCAGGTAATTTAATAAATTTAACCAAAAAAGGTATTGCATGGCAATCAGATATTGAT
AAGAAGTTTAAAAATTACCCAGAGAATGGTGTAGGTGTAATTAATTTTTCAAATTTTGAA
GATGAAGATTTCATTGTTTGGATGAGAACTGCTGCTTTACCAGATTTTAAAAAACTTTAC
AGAATTTATCATGGTCAAAATGGTCCATTGAGTGGTACCATTCAAATTAGAATTGATAAT
AAATACCCAGTTGCTTCATTTGATGGTAAAAAATATGTAGTTTTATCAACAACTTCATGG
ATTGGTGGTAAAAATCCATTTTTAGGTTATGCTTACATTATTGTTGGTATTATTTGTTTC
GTTCAAGGTGTCGTAT
Length of connected seq. 1206
Full length Seq ID CFJ208E
Full length Seq. 
>CFJ208E.Seq
GGATAATTCATTAACTATTAATTAAACAAACATTGATTTAAATATAGTTATATAATATAA
GAAAGAGTAATATTCTTTAAAAAATGGCCATTGACAAAGATTCATCTAAAAGACCGGCTA
ATACCGCATTTAAACAACAAAGATTAAAAGCATGGGAACCAATTTTAACACCAGGACCAG
TAATTATTGCATTTATTGTTATTGGTATTGTTTTTATACCAATTGGAGCAGCAATTATCA
ATTCATCAAATAAGGTGTTAGAACATGTAATTAGATATGACGATAATCCAAATTGTCAAT
TAGGACAAAAATGTACAATTAATTATACACTCCCAACTGAAATGGAATCACCAGTTTATT
TGTATTATAAATTGGATAACTTTTATCAAAACCATCGTAGATATGTAAAATCAAGAAATG
ATGATCAACTTAGAGGTATTGAAGTAACAGATTTCAGTAAATTAAAGGATTGTGAACCAT
TAATTACAACTGATGGTTCTGAAGATGTTAATAAGATTTTAGTTCCATGTGGTTTAATTG
CAAATAGTGTTTTTAATGATTCAATTTCATTAGCAGATGCTTCAGGTAATTTAATAAATT
TAACCAAAAAAGGTATTGCATGGCAATCAGATATTGATAAGAAGTTTAAAAATTACCCAG
AGAATGGTGTAGGTGTAATTAATTTTTCAAATTTTGAAGATGAAGATTTCATTGTTTGGA
TGAGAACTGCTGCTTTACCAGATTTTAAAAAACTTTACAGAATTTATCATGGTCAAAATG
GTCCATTGAGTGGTACCATTCAAATTAGAATTGATAATAAATACCCAGTTGCTTCATTTG
ATGGTAAAAAATATGTAGTTTTATCAACAACTTCATGGATTGGTGGTAAAAATCCATTTT
TAGGTTATGCTTACATTATTGTTGGTATTATTTGTTTCGTTCAAGGTGTCGTAT
Length of full length seq. 954