CFJ206 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFJ206
Library	CF (Link to library)
Clone ID	CFJ206 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15397-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFJ2-A/CFJ206Q.Seq.d/
Representative seq. ID	CFJ206E (Link to Original site)
Representative DNA sequence	>CFJ206 (CFJ206Q) /CSM/CF/CFJ2-A/CFJ206Q.Seq.d/ AATTTAAGAGAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAG TATATTAAATCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCATT GGTAGAGGTGCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATAACAAATTTTTC GCAATGAAAAAGTTGGATAAATCAAAAATGATTGAAAAGCATCAAACAATACATGTAAGA AGTGAACGTGATATTTTAGCTGATAGTAATAATATTCATGGAAGTAATCCATGGATTGTT AGTTTATATTATTCATTCCAAGATGCAAACTTTTTATATTTAATTATGGAATATGTCCCA GGTGGTGATATGATGACACAATTAATTAAATATGATACATTTACAGAAGATGCAACTAGA TTTTATATAGCAGAAACTGTTTTAGCACTTCATTCAATTCATAAACTTAGTTATATTCAT AGAGATATTAAACCTGATAATCTTTTGATCGATCAAAAAGGACATATAAAGGTTAGTGAT TTTGGATTATGTACAGGTTTACAAACAAATAGAGTACCAACATTAGCAGAAATTTATAAA AAATATGAAGGTGATAATAATATTAGAGAAGAGGATCAAACACCACAAAGTAGATCAGCT AGATTTGATTCATGGAAAAGACAGAGAAGAGTATTAGCATATTCAAACGTTGGAACACCA GACTATACTGCACCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGG AGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCA ATTAGAGAAACCTATCATAAGATTATGAATTGGAAACAAACATTACCAAAAATCATGGAA GAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTC ACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTC TTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTCCACAACTC TCTTCACCAACCGATACTTCAAATTTTGATCACTATGAAGAGGAACAACAACCTGAACCA ATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCCCTTTCATT GGTTACACTTATCGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAAACAGTAGA GATGCCTTTGGTAGTATAAATAGTAGAGAAGNCTTTTGGTAGTATAAATAATAGAGATTC TTTACAAGGTGCAAATATGTAAACAGAA
sequence update	2001.11.24
Translated Amino Acid sequence	NLREEQKSVKRRELDKKETEYIKSRRIRLTGHSFESIRIIGRGAFGEVRLVKMKKNNKFF AMKKLDKSKMIEKHQTIHVRSERDILADSNNIHGSNPWIVSLYYSFQDANFLYLIMEYVP GGDMMTQLIKYDTFTEDATRFYIAETVLALHSIHKLSYIHRDIKPDNLLIDQKGHIKVSD FGLCTGLQTNRVPTLAEIYKKYEGDNNIREEDQTPQSRSARFDSWKRQRRVLAYSNVGTP DYTAPEVLMKDGYSAECDWWSVGVIMFEMLVGYPPFCSESIRETYHKIMNWKQTLPKIME EAKAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFFKGVDWRRLRETRPPIIPQL SSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIGYTYRNFDAMRDAFGSVNSR DAFGSINSREXFWyk*rfftrckyvnr
Translated Amino Acid sequence (All Frames)	Frame A: NLREEQKSVKRRELDKKETEYIKSRRIRLTGHSFESIRIIGRGAFGEVRLVKMKKNNKFF AMKKLDKSKMIEKHQTIHVRSERDILADSNNIHGSNPWIVSLYYSFQDANFLYLIMEYVP GGDMMTQLIKYDTFTEDATRFYIAETVLALHSIHKLSYIHRDIKPDNLLIDQKGHIKVSD FGLCTGLQTNRVPTLAEIYKKYEGDNNIREEDQTPQSRSARFDSWKRQRRVLAYSNVGTP DYTAPEVLMKDGYSAECDWWSVGVIMFEMLVGYPPFCSESIRETYHKIMNWKQTLPKIME EAKAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFFKGVDWRRLRETRPPIIPQL SSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIGYTYRNFDAMRDAFGSVNSR DAFGSINSREXFWykrfftrckyvnr Frame B: ieknknqreenwikkkqsilnqeesdslvtllnqseslvevllvrsdwrkritnfs qkswinqklksikqymevnvifliviifmevihgllvyiihskmqtfyilwnmsq vvi*hnlnmihlqkmqldfiqklfhfiqfinlvifieilnliifsikkdirlvi ldyvqvykqieyqhqkfiknmkviiilekrikhhkvdqldlihgkdreeyhiqtlehq tilhqky*kmvtvqsviggvlvllclkcwlvihhfvqnqlekpiirlignkhyqkswk kqkqktvqkhkislnvsspiqlvlvlmvsrrfnlihslkvsigedgkpdlqsfhns lhqpilqilitmkrnnnlnqcnqfnqnqeersllsislslvtlivilmpemplvvtve mplvvivekxfgsinnrdslqganmte Frame C: fkrrtkiskekrigkrnrvyikknqthwslfinqnhwrcfwgqigkdekeqifr nekvgikndkasnntckktyfs***yswksmdcfilfiprcklfifnygicpr wyddtiniyiyrrcnilysrncfstsfnstlysrytsfdrskrtykgf wimyrftnkstnisrnlkir**yrrgsnttkisifmekteksisifkrwntr lyctrsiderwlqcrvlvecwcyyvnvgwlstilfrinrnlsdyeletnitknhgr sksrsklksrstrshtfphrsndsywfwcrgdsissilrcrlektkgnqtsnhsttl ftnryfkfslrgttttnatssikikkkdhffrypfhwlhlsfcherclwckqr clwyk*rxllvviieilykvqickq
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFJ206 (CFJ206Q) /CSM/CF/CFJ2-A/CFJ206Q.Seq.d/ 2666 0.0 CFF849 (CFF849Q) /CSM/CF/CFF8-C/CFF849Q.Seq.d/ 1330 0.0 SSI880 (SSI880Q) /CSM/SS/SSI8-D/SSI880Q.Seq.d/ 1261 0.0 SSM651 (SSM651Q) /CSM/SS/SSM6-C/SSM651Q.Seq.d/ 1239 0.0 VFO102 (VFO102Q) /CSM/VF/VFO1-A/VFO102Q.Seq.d/ 1195 0.0 CFE380 (CFE380Q) /CSM/CF/CFE3-D/CFE380Q.Seq.d/ 1185 0.0 AHF553 (AHF553Q) /CSM/AH/AHF5-C/AHF553Q.Seq.d/ 1183 0.0 SFF332 (SFF332Q) /CSM/SF/SFF3-B/SFF332Q.Seq.d/ 1142 0.0 SHK872 (SHK872Q) /CSM/SH/SHK8-C/SHK872Q.Seq.d/ 1098 0.0 CFA456 (CFA456Q) /CSM/CF/CFA4-C/CFA456Q.Seq.d/ 1082 0.0
own update	2004. 5.30
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BX322632\|BX322632.5 Human DNA sequence * SEQUENCING IN PROGRESS * from clone RP11-52G20. 74 2e-33 8 E24614\|E24614.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein. 74 4e-30 5 E24613\|E24613.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein. 74 3e-29 5 AR310712\|AR310712.1 Sequence 3 from patent US 6559285. 74 2e-28 5 AR201455\|AR201455.1 Sequence 3 from patent US 6359193. 74 2e-28 5 AF164041\|AF164041.1 Homo sapiens WARTS protein kinase (WARTS) mRNA, complete cds. 74 3e-28 5 AF104413\|AF104413.1 Homo sapiens large tumor suppressor 1 (LATS1) mRNA, complete cds. 74 3e-28 5 AR266953\|AR266953.1 Sequence 1 from patent US 6495353. 74 2e-27 5 AL583963\|AL583963.11 Human DNA sequence from clone RP1-203A15 on chromosome 6. 74 7e-23 7 AY422071\|AY422071.1 Pneumocystis carinii CBK1 mRNA, complete cds. 52 3e-21 4
dna update	2003.11.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q6CFS5) RecName: Full=Serine/threonine-protein kinase CBK1; ... 395 e-108 AY335703_1(AY335703\|pid:none) Synthetic construct Homo sapiens s... 390 e-107 BC151309_1(BC151309\|pid:none) Bos taurus serine/threonine kinase... 390 e-107 AK312559_1(AK312559\|pid:none) Homo sapiens cDNA, FLJ92932, highl... 388 e-106 (Q15208) RecName: Full=Serine/threonine-protein kinase 38; ... 388 e-106 BC160812_1(BC160812\|pid:none) Rattus norvegicus serine/threonine... 386 e-106 CR860478_1(CR860478\|pid:none) Pongo abelii mRNA; cDNA DKFZp469F1... 386 e-105 (A2VDV2) RecName: Full=Serine/threonine-protein kinase 38; ... 386 e-105 AK052288_1(AK052288\|pid:none) Mus musculus 13 days embryo heart ... 386 e-105 BC165742_1(BC165742\|pid:none) Danio rerio zgc:55572, mRNA (cDNA ... 385 e-105
protein update	2009. 7. 1
PSORT	psg: 0.22 gvh: 0.37 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00 nuc: 0.13 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: cytoskeletal 8.0 %: mitochondrial 4.0 %: vesicles of secretory system >> prediction for CFJ206 is nuc
5' end seq. ID	CFJ206F
5' end seq.	>CFJ206F.Seq AATTTAAGAGAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAG TATATTAAATCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCATT GGTAGAGGTGCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATAACAAATTTTTC GCAATGAAAAAGTTGGATAAATCAAAAATGATTGAAAAGCATCAAACAATACATGTAAGA AGTGAACGTGATATTTTAGCTGATAGTAATAATATTCATGGAAGTAATCCATGGATTGTT AGTTTATATTATTCATTCCAAGATGCAAACTTTTTATATTTAATTATGGAATATGTCCCA GGTGGTGATATGATGACACAATTAATTAAATATGATACATTTACAGAAGATGCAACTAGA TTTTATATAGCAGAAACTGTTTTAGCACTTCATTCAATTCATAAACTTAGTTATATTCAT AGAGATATTAAACCTGATAATCTTTTGATCGATCAAAAAGGACATATAAAGGTTAGTGAT TTTGGATTATGTACAGGTTTACAAACAAATAGAGTACCAACATTAGCAGAAATTTATAAA AAATATGAAGGTGATAATAATATTAGAGNNNNNNNNNN
Length of 5' end seq.	638
3' end seq. ID	CFJ206Z
3' end seq.	>CFJ206Z.Seq NNNNNNNNNNGTTTACAANCAAATAGAGTACCAACATTAGCAGAAATTTATAAAAAATAT GAAGGTGATAATAATATTAGAGAAGAGGATCAAACACCACAAAGTAGATCAGCTAGATTT GATTCATGGAAAAGACAGAGAAGAGTATTAGCATATTCAAACGTTGGAACACCAGACTAT ACTGCACCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGGAGTGTT GGTGTTATTATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCAATTAGA GAAACCTATCATAAGATTATGAATTGGAAACAAACATTACCAAAAATCATGGAAGAAGCA AAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTCACCGAT CCAATGACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTCTTTAAA GGTGTCGATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTCCACAACTCTCTTCA CCAACCGATACTTCAAATTTTGATCACTATGAAGAGGAACAACAACCTGAACCAATGCAA CCAGTTCAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCCCTTTCATTGGTTAC ACTTATCGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAAACAGTAGAGATGCC TTTGGTAGTATAAATAGTAGAGAAGNCTTTTGGTAGTATAAATAATAGAGATTCTTTACA AGGTGCAAATATGTAAACAGAA
Length of 3' end seq.	802
Connected seq. ID	CFJ206P
Connected seq.	>CFJ206P.Seq AATTTAAGAGAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAG TATATTAAATCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCATT GGTAGAGGTGCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATAACAAATTTTTC GCAATGAAAAAGTTGGATAAATCAAAAATGATTGAAAAGCATCAAACAATACATGTAAGA AGTGAACGTGATATTTTAGCTGATAGTAATAATATTCATGGAAGTAATCCATGGATTGTT AGTTTATATTATTCATTCCAAGATGCAAACTTTTTATATTTAATTATGGAATATGTCCCA GGTGGTGATATGATGACACAATTAATTAAATATGATACATTTACAGAAGATGCAACTAGA TTTTATATAGCAGAAACTGTTTTAGCACTTCATTCAATTCATAAACTTAGTTATATTCAT AGAGATATTAAACCTGATAATCTTTTGATCGATCAAAAAGGACATATAAAGGTTAGTGAT TTTGGATTATGTACAGGTTTACAAACAAATAGAGTACCAACATTAGCAGAAATTTATAAA AAATATGAAGGTGATAATAATATTAGAG----------GTTTACAANCAAATAGAGTACC AACATTAGCAGAAATTTATAAAAAATATGAAGGTGATAATAATATTAGAGAAGAGGATCA AACACCACAAAGTAGATCAGCTAGATTTGATTCATGGAAAAGACAGAGAAGAGTATTAGC ATATTCAAACGTTGGAACACCAGACTATACTGCACCAGAAGTATTGATGAAAGATGGTTA CAGTGCAGAGTGTGATTGGTGGAGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTTA TCCACCATTTTGTTCAGAATCAATTAGAGAAACCTATCATAAGATTATGAATTGGAAACA AACATTACCAAAAATCATGGAAGAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACA AGATCTCATTGAACGTTTCCTCACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGA GGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAG ACCTCCAATCATTCCACAACTCTCTTCACCAACCGATACTTCAAATTTTGATCACTATGA AGAGGAACAACAACCTGAACCAATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCAC TTCTTTCGATATCCCTTTCATTGGTTACACTTATCGTAATTTTGATGCCATGAGAGATGC CTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGTATAAATAGTAGAGAAGNCTTTTG GTAGTATAAATAATAGAGATTCTTTACAAGGTGCAAATATGTAAACAGAA
Length of connected seq.	1420
Full length Seq ID	CFJ206E
Full length Seq.	>CFJ206E.Seq AATTTAAGAGAAGAACAAAAATCAGTAAAGAGAAGAGAATTGGATAAAAAAGAAACAGAG TATATTAAATCAAGAAGAATCAGACTCACTGGTCACTCTTTTGAATCAATCAGAATCATT GGTAGAGGTGCTTTTGGTGAGGTCAGATTGGTAAAGATGAAAAAGAATAACAAATTTTTC GCAATGAAAAAGTTGGATAAATCAAAAATGATTGAAAAGCATCAAACAATACATGTAAGA AGTGAACGTGATATTTTAGCTGATAGTAATAATATTCATGGAAGTAATCCATGGATTGTT AGTTTATATTATTCATTCCAAGATGCAAACTTTTTATATTTAATTATGGAATATGTCCCA GGTGGTGATATGATGACACAATTAATTAAATATGATACATTTACAGAAGATGCAACTAGA TTTTATATAGCAGAAACTGTTTTAGCACTTCATTCAATTCATAAACTTAGTTATATTCAT AGAGATATTAAACCTGATAATCTTTTGATCGATCAAAAAGGACATATAAAGGTTAGTGAT TTTGGATTATGTACAGGTTTACAAACAAATAGAGTACCAACATTAGCAGAAATTTATAAA AAATATGAAGGTGATAATAATATTAGAGAAGAGGATCAAACACCACAAAGTAGATCAGCT AGATTTGATTCATGGAAAAGACAGAGAAGAGTATTAGCATATTCAAACGTTGGAACACCA GACTATACTGCACCAGAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGG AGTGTTGGTGTTATTATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCA ATTAGAGAAACCTATCATAAGATTATGAATTGGAAACAAACATTACCAAAAATCATGGAA GAAGCAAAAGCAGAAGTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTC ACCGATCCAATGACTCGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTC TTTAAAGGTGTCGATTGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTCCACAACTC TCTTCACCAACCGATACTTCAAATTTTGATCACTATGAAGAGGAACAACAACCTGAACCA ATGCAACCAGTTCAATCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCCCTTTCATT GGTTACACTTATCGTAATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAAACAGTAGA GATGCCTTTGGTAGTATAAATAGTAGAGAAGNCTTTTGGTAGTATAAATAATAGAGATTC TTTACAAGGTGCAAATATGTAAACAGAA
Length of full length seq.	1348

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas