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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFJ176
Library CF
(Link to library)
Clone ID CFJ176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFJ176 (CFJ176Q) /CSM/CF/CFJ1-D/CFJ176Q.Seq.d/
XXXXXXXXXXGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAA
TAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACA
AGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAA
ATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGA
AGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAA
AGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAAT
TAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGA
AACTGAAAATGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGA
AGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGA
AGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAG
TTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTAT
CAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTCTCATATATA
sequence update 2001.11.22
Translated Amino Acid sequence 
---VLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDKS
TGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIK
DEKVAAKISDSDKSTIESETENVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEG
GMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyi
Translated Amino Acid sequence (All Frames) 
Frame A:
---vy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*myqlkin
qlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsllkiql
kmkklqpkfqiqinqllnlklkmysng*nqikpqkrmnmkir*kp*kqlsiqs*vnsikk
evchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinkashi


Frame B:
---cinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkcis*r*i
nw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*kfn*
r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*tlsrr
ryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflknnklvksiklliy


Frame C:
---VLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDKS
TGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIK
DEKVAAKISDSDKSTIESETENVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEG
GMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*sfsyi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ176 (CFJ176Q) /CSM/CF/CFJ1-D/CFJ176Q.Seq.d/                       1403   0.0
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/                       1396   0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/                       1396   0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/                       1396   0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/                       1396   0.0
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/                       1396   0.0
VHP236 (VHP236Q) /CSM/VH/VHP2-B/VHP236Q.Seq.d/                       1396   0.0
VHO677 (VHO677Q) /CSM/VH/VHO6-D/VHO677Q.Seq.d/                       1396   0.0
VHO566 (VHO566Q) /CSM/VH/VHO5-C/VHO566Q.Seq.d/                       1396   0.0
VHN681 (VHN681Q) /CSM/VH/VHN6-D/VHN681Q.Seq.d/                       1396   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1396   0.0    1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1388   0.0    1
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein  70.    96   1e-44  4
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds.    96   1e-44  4
AF221542|AF221542.1 Cryptosporidium muris isolate 589 heat shock protein 70 (HSP70) gene, partial cds.    96   4e-40  5
AF221543|AF221543.1 Cryptosporidium muris isolate 707 heat shock protein 70 (HSP70) gene, partial cds.    92   7e-37  3
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.    84   1e-36  5
BI773123|BI773123.1 kq45c07.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    90   1e-35  3
BI772941|BI772941.1 kq08c08.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    90   1e-35  3
BI773212|BI773212.1 kq63e05.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    90   1e-35  3
dna update 2003.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   342   8e-93
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   342   8e-93
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   250   3e-65
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   247   3e-64
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   246   4e-64
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           246   4e-64
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   246   5e-64
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   246   5e-64
AY035123_1(AY035123|pid:none) Arabidopsis thaliana putative dnaK...   246   5e-64
EF506931_1(EF506931|pid:none) Fasciola gigantica heat shock prot...   246   6e-64
protein update 2009. 5.16
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFJ176 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFJ176Z
3' end seq. 
>CFJ176Z.Seq
NNNNNNNNNNGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAA
TAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACA
AGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAA
ATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGA
AGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAA
AGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAAT
TAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGA
AACTGAAAATGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGA
AGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGA
AGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAG
TTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTAT
CAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTCTCATATATA
Length of 3' end seq. 718
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -