CFJ164
Library CF
(Link to library)
Clone ID CFJ164
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U07854-1
Original site URL
Representative seq. ID CFJ164P
(Link to Original site)
Representative DNA sequence
>CFJ164 (CFJ164Q) /CSM/CF/CFJ1-C/CFJ164Q.Seq.d/
ATATTTTATTTTTCTATCATTTATAAATACACATTTATATAATAATTACATATTAAATTA
AACCATTCACTAAATACTATAAAAAAAAAAAAAAAANTANTCAAANCANTTTTTAAAAAA
NAAAAATAATNTTTCCCCNTTAAAAAAAAAAXXXXXXXXXXGGCGTTAATGGACCAAATG
AGAGTGATGGAACGTGGTATTTTTGAACGTGATGAAAAGATTAAACAAATGGAGAAGGTG
ATTGAAACTTTCACACTCCAACANATAAATAGTGGTCTATCACCACCCACACAAATTATC
TATCCCCAATTCAATACAATTAGACAACAACAACAACAATACTCCTNTGCCAGTGAACCA
AATTCAACCACCACTACACCCACCGNTAAAGGTTNTTTAGTCGATAAACTTTCACAATNT
TNTTCAACTGTTGATGCTGGTATTTTATCAACTGCCGATGCTCCAAATACTTTTATTCCA
ATTTCAAAGTATCCATTACCAANANAAGCTTCAACTTTATTTGAATNTTCAAATTCACCA
CAGCCATCTACAACTGTAAATATAGTTTCAGCAAATCAACAACAACAACAACAATCATTA
AATAGATCAACAAGTTTTTGGCAATCACCAAAAGCNTACGNTTNCAATNTATTAGGCTTA
sequence update 2001.11.22
Translated Amino Acid sequence
yfiflsfinthlynnyiln*tih*il*KKKKXXSXXFLKXKNNXSPLKKK---

---ALMDQMRVMERGIFERDEKIKQMEKVIETFTLQXINSGLSPPTQIIYPQFNTIRQQQ
QQYSXASEPNSTTTTPTXKGXLVDKLSQXXSTVDAGILSTADAPNTFIPISKYPLPXXAS
TLFEXSNSPQPSTTVNIVSANQQQQQQSLNRSTSFWQSPKAYXXNXLGL


Translated Amino Acid sequence (All Frames)
Frame A:
ifyfsiiykytfi**lhiklnhslntikkkkkxxkxxfkkxk*xfpxkkk---

---gvngpnesdgtwyf*t**kd*tngegd*nfhtptxk*wsitthtnylspiqyn*ttt
ttillcq*tkfnhhythr*rxfsr*tftxxfnc*cwyfincrcskyfysnfkvsitxxsf
nfi*xfkfttaiynckysfskstttttiik*inkflaitksxrxqxirl

Frame B:
yfiflsfinthlynnyiln*tih*il*KKKKXXSXXFLKXKNNXSPLKKK---

---ALMDQMRVMERGIFERDEKIKQMEKVIETFTLQXINSGLSPPTQIIYPQFNTIRQQQ
QQYSXASEPNSTTTTPTXKGXLVDKLSQXXSTVDAGILSTADAPNTFIPISKYPLPXXAS
TLFEXSNSPQPSTTVNIVSANQQQQQQSLNRSTSFWQSPKAYXXNXLGL

Frame C:
ilffyhl*ihiyiiity*ikpftkyykkkkkxxqxxf*kxkixfpx*kk---

---r*wtk*e*wnvvflnvmkrlnkwrr*lklshsnx*ivvyhhphklsipnsiqldnnn
nntpxpvnqiqpplhppxkvx*sinfhnxxqllmlvfyqlpmlqillfqfqsihyqxklq
lylnxqihhshlql*i*fqqinnnnnnh*idqqvfgnhqkxtxxxy*a

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFJ164 (CFJ164Q) /CSM/CF/CFJ1-C/CFJ164Q.Seq.d/ 769 0.0
CFJ237 (CFJ237Q) /CSM/CF/CFJ2-B/CFJ237Q.Seq.d/ 686 0.0
CFH878 (CFH878Q) /CSM/CF/CFH8-D/CFH878Q.Seq.d/ 391 e-107
CFE278 (CFE278Q) /CSM/CF/CFE2-D/CFE278Q.Seq.d/ 319 3e-86
CFE134 (CFE134Q) /CSM/CF/CFE1-B/CFE134Q.Seq.d/ 94 3e-18
CFE226 (CFE226Q) /CSM/CF/CFE2-B/CFE226Q.Seq.d/ 46 7e-04
SSL185 (SSL185Q) /CSM/SS/SSL1-D/SSL185Q.Seq.d/ 44 0.003
CFJ227 (CFJ227Q) /CSM/CF/CFJ2-B/CFJ227Q.Seq.d/ 44 0.003
FC-AA15 (FC-AA15Q) /CSM/FC/FC-AA/FC-AA15Q.Seq.d/ 40 0.042
CHF407 (CHF407Q) /CSM/CH/CHF4-A/CHF407Q.Seq.d/ 40 0.042

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 36 1e-04 8
AC101335|AC101335.1 Mus musculus clone RP23-109K24, LOW-PASS SEQUENCE SAMPLING. 44 1e-04 2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 40 2e-04 9
AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence. 36 3e-04 8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 8e-04 5
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 36 0.001 7
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence. 38 0.001 5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 36 0.002 8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 40 0.002 5
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 0.002 6
dna update 2003.11.28
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 744,481,745
protein update 2009. 5.16
PSORT

psg: 0.74 gvh: 0.34 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: peroxisomal

>> prediction for CFJ164 is cyt

5' end seq. ID CFJ164F
5' end seq.
>CFJ164F.Seq
ATATTTTATTTTTCTATCATTTATAAATACACATTTATATAATAATTACATATTAAATTA
AACCATTCACTAAATACTATAAAAAAAAAAAAAAAANTANTCAAANCANTTTTTAAAAAA
NAAAAATAATNTTTCCCCNTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 161
3' end seq. ID CFJ164Z
3' end seq.
>CFJ164Z.Seq
NNNNNNNNNNGGCGTTAATGGACCAAATGAGAGTGATGGAACGTGGTATTTTTGAACGTG
ATGAAAAGATTAAACAAATGGAGAAGGTGATTGAAACTTTCACACTCCAACANATAAATA
GTGGTCTATCACCACCCACACAAATTATCTATCCCCAATTCAATACAATTAGACAACAAC
AACAACAATACTCCTNTGCCAGTGAACCAAATTCAACCACCACTACACCCACCGNTAAAG
GTTNTTTAGTCGATAAACTTTCACAATNTTNTTCAACTGTTGATGCTGGTATTTTATCAA
CTGCCGATGCTCCAAATACTTTTATTCCAATTTCAAAGTATCCATTACCAANANAAGCTT
CAACTTTATTTGAATNTTCAAATTCACCACAGCCATCTACAACTGTAAATATAGTTTCAG
CAAATCAACAACAACAACAACAATCATTAAATAGATCAACAAGTTTTTGGCAATCACCAA
AAGCNTACGNTTNCAATNTATTAGGCTTA
Length of 3' end seq. 509
Connected seq. ID CFJ164P
Connected seq.
>CFJ164P.Seq
ATATTTTATTTTTCTATCATTTATAAATACACATTTATATAATAATTACATATTAAATTA
AACCATTCACTAAATACTATAAAAAAAAAAAAAAAANTANTCAAANCANTTTTTAAAAAA
NAAAAATAATNTTTCCCCNTTAAAAAAAAAA----------GGCGTTAATGGACCAAATG
AGAGTGATGGAACGTGGTATTTTTGAACGTGATGAAAAGATTAAACAAATGGAGAAGGTG
ATTGAAACTTTCACACTCCAACANATAAATAGTGGTCTATCACCACCCACACAAATTATC
TATCCCCAATTCAATACAATTAGACAACAACAACAACAATACTCCTNTGCCAGTGAACCA
AATTCAACCACCACTACACCCACCGNTAAAGGTTNTTTAGTCGATAAACTTTCACAATNT
TNTTCAACTGTTGATGCTGGTATTTTATCAACTGCCGATGCTCCAAATACTTTTATTCCA
ATTTCAAAGTATCCATTACCAANANAAGCTTCAACTTTATTTGAATNTTCAAATTCACCA
CAGCCATCTACAACTGTAAATATAGTTTCAGCAAATCAACAACAACAACAACAATCATTA
AATAGATCAACAAGTTTTTGGCAATCACCAAAAGCNTACGNTTNCAATNTATTAGGCTTA
Length of connected seq. 650
Full length Seq ID -
Full length Seq. -
Length of full length seq. -