>CFJ158 (CFJ158Q) /CSM/CF/CFJ1-C/CFJ158Q.Seq.d/
XXXXXXXXXXTAGAATTACAAGTTTTAGACTCAAAAACTGGTGAACGTTTATATATTAAT
CCCGATATCAATGGTTGTAAAGAAATTTCTGGTGTATTGGCAATCTCTAAACCTTGGCCA
GGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCTTCAAACTTATATGACTCAA
TATAAAGGTCACTATTTCACTGGTGATGGTGTAAAACTTGACTCTGATGGTTATTATTGG
ATCGAAGGTAGAGTAGATGATGTTATCAATGTTAGTGGTCATAGATTAGGTACTGCTGAA
TTAGAGAGTGCCCTCGTTGGTTGTTCAATTTGTGCAGAGGCTGCCGTTGTTGGTTATCCT
CATGATATCAAAGGTCAAGGTATTTTAGCATTTTGTACACTCAAAGAAGGTTATCAAGAG
GATGAATCAAATGTTATTATGATGTTAAAAAAAGAAGTTAGAAATGTAATTGGTCCATTT
GCAACACCTGATGTAATTGTTATAACACCTTCACTTCCAAAAACTCGTAGTGGTAAAATT
ATGAGAAGAATTCTTAGAAAAATTGGTTGTCATGAATCTTCTGCTGAACAATTAGGTGAT
ATTTCAACTTTAGCTGAACCTGAAGTTGTCAAACTTTTAATGAAAAAGTTTCAAAAGTAA
TTCCAAAAACTCATTAAAAAAATAAAAAATAAAAAAAAATAAATTCAGATTCGAA

---ELQVLDSKTGERLYINPDINGCKEISGVLAISKPWPGIARSVYRSHGRYLQTYMTQY
KGHYFTGDGVKLDSDGYYWIEGRVDDVINVSGHRLGTAELESALVGCSICAEAAVVGYPH
DIKGQGILAFCTLKEGYQEDESNVIMMLKKEVRNVIGPFATPDVIVITPSLPKTRSGKIM
RRILRKIGCHESSAEQLGDISTLAEPEVVKLLMKKFQK*fqklikkiknkkk*iqir

Frame A:
---ritsfrlknw*tfiy*sryqwl*rnfwcignl*tlarycsfslsfswslssnlydsi
*rslfhw*wckt*l*wllldrr*sr*cyqc*ws*iryc*irecprwlfnlcrgcrcwlss
*yqrsryfsilytqrrlsrg*ikcyydvkkrs*kcnwsicnt*cncyntftskns*w*ny
ekns*knwls*ifc*tir*yfnfs*t*scqtfnekvskvipkth*knkk*kkinsds


Frame B:
---ELQVLDSKTGERLYINPDINGCKEISGVLAISKPWPGIARSVYRSHGRYLQTYMTQY
KGHYFTGDGVKLDSDGYYWIEGRVDDVINVSGHRLGTAELESALVGCSICAEAAVVGYPH
DIKGQGILAFCTLKEGYQEDESNVIMMLKKEVRNVIGPFATPDVIVITPSLPKTRSGKIM
RRILRKIGCHESSAEQLGDISTLAEPEVVKLLMKKFQK*fqklikkiknkkk*iqir


Frame C:
---nykf*tqklvnvyilipismvvkkflvywqslnlgqvllvqfivlmvvifkli*lni
kvtislvmv*nltlmviigskve*mmlsmlvvid*vlln*rvpslvvqfvqrlpllvilm
iskvkvf*hfvhskkvikrmnqmll*c*kkklem*lvhlqhlm*ll*hlhfqklvvvkl*
eefleklvvmnlllnn*vifql*lnlklsnf**ksfksnsknslkk*kikknkfrfe

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ158 (CFJ158Q) /CSM/CF/CFJ1-C/CFJ158Q.Seq.d/                       1277   0.0
VHO673 (VHO673Q) /CSM/VH/VHO6-D/VHO673Q.Seq.d/                       1271   0.0
SFF506 (SFF506Q) /CSM/SF/SFF5-A/SFF506Q.Seq.d/                       1271   0.0
AFE757 (AFE757Q) /CSM/AF/AFE7-C/AFE757Q.Seq.d/                       1271   0.0
SFB864 (SFB864Q) /CSM/SF/SFB8-C/SFB864Q.Seq.d/                       1263   0.0
VHJ869 (VHJ869Q) /CSM/VH/VHJ8-C/VHJ869Q.Seq.d/                       1255   0.0
VHO771 (VHO771Q) /CSM/VH/VHO7-C/VHO771Q.Seq.d/                       1249   0.0
VHE704 (VHE704Q) /CSM/VH/VHE7-A/VHE704Q.Seq.d/                       1249   0.0
CHF658 (CHF658Q) /CSM/CH/CHF6-C/CHF658Q.Seq.d/                       1247   0.0
CFH854 (CFH854Q) /CSM/CF/CFH8-C/CFH854Q.Seq.d/                       1229   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   864   0.0    4
AX489103|AX489103.1 Sequence 6403 from Patent WO02053728.          70   1e-19  4
AZ930496|AZ930496.1 474.dhz54h09.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz54h09.s1, DNA sequence.    72   2e-14  2
CD978883|CD978883.1 QAF6c12.yg QAF Zea mays cDNA clone QAF6c12, mRNA sequence.    42   1e-13  4
AW037040|AW037040.1 614025A12.y1 614 - root cDNA library from Walbot Lab Zea mays cDNA, mRNA sequence.    42   5e-13  4
BI674812|BI674812.1 949067E10.y2 949 - Juvenile leaf and shoot cDNA from Steve Moose Zea mays cDNA, mRNA sequence.    42   1e-12  4
CA269673|CA269673.1 SCMCRT3083F09.g RT3 Saccharum officinarum cDNA clone SCMCRT3083F09 5', mRNA sequence.    42   2e-12  4
CA258874|CA258874.1 SCBGRT3013E01.g RT3 Saccharum officinarum cDNA clone SCBGRT3013E01 5', mRNA sequence.    42   2e-12  4
CF635493|CF635493.1 zmrww00_0A20-011-b10.s2 zmrww00 Zea mays cDNA, mRNA sequence.    42   3e-12  4
BI478599|BI478599.1 949067E10.x1 949 - Juvenile leaf and shoot cDNA from Steve Moose Zea mays cDNA, mRNA sequence.    42   2e-11  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115612_37(AC115612|pid:none) Dictyostelium discoideum chromoso...   419   e-117
(Q54Z60) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   419   e-117
(Q6MNF1) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   222   8e-57
CP000158_1385(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...   221   2e-56
DQ782753_1(DQ782753|pid:none) Polytomella parva plastid acetyl C...   221   2e-56
CP000927_111(CP000927|pid:none) Caulobacter sp. K31, complete ge...   219   6e-56
(Q056J9) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   218   1e-55
CP000157_932(CP000157|pid:none) Erythrobacter litoralis HTCC2594...   217   2e-55
CP000478_739(CP000478|pid:none) Syntrophobacter fumaroxidans MPO...   217   2e-55
(A1U2S9) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   216   5e-55

 psg: 0.75  gvh: 0.46  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CFJ158 is cyt

>CFJ158Z.Seq
NNNNNNNNNNTAGAATTACAAGTTTTAGACTCAAAAACTGGTGAACGTTTATATATTAAT
CCCGATATCAATGGTTGTAAAGAAATTTCTGGTGTATTGGCAATCTCTAAACCTTGGCCA
GGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCTTCAAACTTATATGACTCAA
TATAAAGGTCACTATTTCACTGGTGATGGTGTAAAACTTGACTCTGATGGTTATTATTGG
ATCGAAGGTAGAGTAGATGATGTTATCAATGTTAGTGGTCATAGATTAGGTACTGCTGAA
TTAGAGAGTGCCCTCGTTGGTTGTTCAATTTGTGCAGAGGCTGCCGTTGTTGGTTATCCT
CATGATATCAAAGGTCAAGGTATTTTAGCATTTTGTACACTCAAAGAAGGTTATCAAGAG
GATGAATCAAATGTTATTATGATGTTAAAAAAAGAAGTTAGAAATGTAATTGGTCCATTT
GCAACACCTGATGTAATTGTTATAACACCTTCACTTCCAAAAACTCGTAGTGGTAAAATT
ATGAGAAGAATTCTTAGAAAAATTGGTTGTCATGAATCTTCTGCTGAACAATTAGGTGAT
ATTTCAACTTTAGCTGAACCTGAAGTTGTCAAACTTTTAATGAAAAAGTTTCAAAAGTAA
TTCCAAAAACTCATTAAAAAAATAAAAAATAAAAAAAAATAAATTCAGATTCGAA