CFJ154 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFJ154
Library	CF (Link to library)
Clone ID	CFJ154 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15666-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFJ1-C/CFJ154Q.Seq.d/
Representative seq. ID	CFJ154P (Link to Original site)
Representative DNA sequence	>CFJ154 (CFJ154Q) /CSM/CF/CFJ1-C/CFJ154Q.Seq.d/ AGTAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGA AAAAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAAT AATCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAG AAATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAAC TCCATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATA TGGATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCAC AGATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATAT CATTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTA TGAGCAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGG TCAAAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATC ATCATCATCATCATTATTTCAACAAAGCGTTCGTXXXXXXXXXXTGGTGGTAATATAAGT AGAGTTGGTGGTGGTAGTGGTGGTGGTATATATTCTCAAAGACAAACTGGTCAGAATGAA GATAGAACTAAATTATCAGATAAAATGAAAAAGTATGCAAGTATAATTGAAGAGTATGAT ATTCACATGGCAGATCAATCAAAATCTTATGGTTTCCCATTGGTTCATAGATTAATGGAT GCCTGTCTTTCAACAGATATTAATATTGGTGGTGGAATTAATACAAATACTGCCACTACT ATAGTAACCCATGTTTGGAATTTATTATTAACATTAACAAGTGAAATCGATACAACAAAT TATATTCAACAATTAAAAGAACAACAACAACAACAACAACAACAAACACCTCAATTAAAG GAACAACAACAAAAACAACAACAATTAACAGAACTTCAAAAACATACAAAATATCACACA AAACCAACTATGGCCCAATTATTAAAGAGATCTATTTCATTTTTAGAGACTCAGTTTAGT CAAGTAATTGAAAGTCGTTTACCAAAACATTCAAATGTATCATTACCACTGAATATTATT GTGGCATATATCAAGTCATTGAATCAATCACCATTAACCGATAGTTCTGATGAAATTTAT GAAGGTTGTTCCATTTGGTGTATCATTTACTATCTATTACGTAGTGGTTATACCTTAGAG GCATACCAATTTGCATNGAAAAATGGGATCCCGTTATTTCGATATTTATCACCAA
sequence update	2001.11.22
Translated Amino Acid sequence	vkccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIER NLQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFT DVQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILG QKHIKVLPSVGGASASNQSSSSSSLFQQSVR--- ---GGNISRVGGGSGGGIYSQRQTGQNEDRTKLSDKMKKYASIIEEYDIHMADQSKSYGF PLVHRLMDACLSTDINIGGGINTNTATTIVTHVWNLLLTLTSEIDTTNYIQQLKEQQQQQ QQQTPQLKEQQQKQQQLTELQKHTKYHTKPTMAQLLKRSISFLETQFSQVIESRLPKHSN VSLPLNIIVAYIKSLNQSPLTDSSDEIYEGCSIWCIIYYLLRSGYTLEAYQFAXKNGIPL FRYLSP
Translated Amino Acid sequence (All Frames)	Frame A: skvlfnypniydkikkegkkneckgngf*fikiqsnnqniiifksnwviiiqhk kstrdwyiktiefnfiknsifksigtkcisrfnkiwirsksfskefiyqyiiih rcsistnrywlfkgsieyhfeynlhskkdikrvsiplaninslerkifrgdfr sktysftkcwwcrsiiiiiiiistkrs--- ---wwykswwwwwwyifsktnwserniirnekvckynrvyshgrsikilwf pigsingclsfnryywwwnykychyysnpclefiininknrynklystikrttttt tttntsikgtttktttinrtsktykishktnygpiikeiyfifrdsvssnksftktfk ciitteyycgiyqviesitinrfnlrlfhlvyhllsitwlylrgipicxekwdpv isifit Frame B: vkccstinptfminkKRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIER NLQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFT DVQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILG QKHIKVLPSVGGASASNQSSSSSSLFQQSVR--- ---GGNISRVGGGSGGGIYSQRQTGQNEDRTKLSDKMKKYASIIEEYDIHMADQSKSYGF PLVHRLMDACLSTDINIGGGINTNTATTIVTHVWNLLLTLTSEIDTTNYIQQLKEQQQQQ QQQTPQLKEQQQKQQQLTELQKHTKYHTKPTMAQLLKRSISFLETQFSQVIESRLPKHSN VSLPLNIIVAYIKSLNQSPLTDSSDEIYEGCSIWCIIYYLLRSGYTLEAYQFAXKNGIPL FRYLSP Frame C: svvqlltqhlinkkggkkkmrkwilmiyqinpiksieyhhfqvqlgyhhstlke iykrlvihqnnmilhqklhfqihwnqmyfkilklienmdiqkfqriylisihhhsq mfnqyqqilmvirfnlrisfiqfvtfkkrhqksfnpimskhqfmigieiknirrfv knilkfyqvlvvlalvinhhhhhhyfnkaf--- ---vvivelvvvvvvvyilkdklvrmkielnyqikksmqvlksmiftwqinqnlmvs hwfidwmpvfqqililvveliqilpll*pmfgiyyhqvksiqqiifnnknnnnnn nnkhlnrnnnknnnnqnfkniqnitqnqlwpnyrdlfhfrlslvklkvvyqniqm yhyhillwhisshinhhpivlmkfmkvvpfgvsftiyyvvvip*rhtnlhxkmgsry fdiyhq
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFJ154 (CFJ154Q) /CSM/CF/CFJ1-C/CFJ154Q.Seq.d/ 1074 0.0 SHL644 (SHL644Q) /CSM/SH/SHL6-B/SHL644Q.Seq.d/ 1065 0.0 SHE664 (SHE664Q) /CSM/SH/SHE6-C/SHE664Q.Seq.d/ 1065 0.0 VHI142 (VHI142Q) /CSM/VH/VHI1-B/VHI142Q.Seq.d/ 1061 0.0 VHH243 (VHH243Q) /CSM/VH/VHH2-B/VHH243Q.Seq.d/ 1061 0.0 VHG830 (VHG830Q) /CSM/VH/VHG8-B/VHG830Q.Seq.d/ 1061 0.0 VHC228 (VHC228Q) /CSM/VH/VHC2-B/VHC228Q.Seq.d/ 1061 0.0 VFB672 (VFB672Q) /CSM/VF/VFB6-C/VFB672Q.Seq.d/ 1061 0.0 SHJ541 (SHJ541Q) /CSM/SH/SHJ5-B/SHJ541Q.Seq.d/ 1061 0.0 SHH657 (SHH657Q) /CSM/SH/SHH6-C/SHH657Q.Seq.d/ 1061 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 3e-08 21 AP003187\|AP003187.2 Clostridium perfringens DNA, complete genome, section 3/10. 36 1e-05 16 AC116988\|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 3e-05 19 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 32 3e-05 18 AL929356\|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5. 36 1e-04 18 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 34 3e-04 19 AE014829\|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence. 34 4e-04 17 AE014834\|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence. 40 5e-04 13 AF409138\|AF409138.1 Lumpy skin disease virus isolate Neethling vaccine LW 1959, complete genome. 34 6e-04 11 AF325528\|AF325528.1 Lumpy skin disease virus isolate Neethling 2490, complete genome. 34 6e-04 11
dna update	2003.11.28
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AX716925_1(AX716925\|pid:none) Sequence 36 from Patent WO03020757. 47 0.001 (Q7ZX96) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 47 0.002 (A5PJZ5) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 46 0.003 D42085_1(D42085\|pid:none) Homo sapiens KIAA0095 mRNA, partial cds. 46 0.003 BC034346_1(BC034346\|pid:none) Homo sapiens nucleoporin 93kDa, mR... 46 0.003 (Q8BJ71) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 46 0.003 (Q66HC5) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 46 0.003 (Q5R822) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 45 0.006 CR859933_1(CR859933\|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1... 45 0.006 CR859615_1(CR859615\|pid:none) Pongo abelii mRNA; cDNA DKFZp468J0... 45 0.006
protein update	2009. 5.16
PSORT	psg: 0.57 gvh: 0.44 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.02 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 36.0 %: nuclear 12.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for CFJ154 is cyt
5' end seq. ID	CFJ154F
5' end seq.	>CFJ154F.Seq AGTAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGA AAAAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAAT AATCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAG AAATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAAC TCCATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATA TGGATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCAC AGATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATAT CATTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTA TGAGCAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGG TCAAAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATC ATCATCATCATCATTATTTCAACAAAGCGTTCGTNNNNNNNNNN
Length of 5' end seq.	644
3' end seq. ID	CFJ154Z
3' end seq.	>CFJ154Z.Seq NNNNNNNNNNTGGTGGTAATATAAGTAGAGTTGGTGGTGGTAGTGGTGGTGGTATATATT CTCAAAGACAAACTGGTCAGAATGAAGATAGAACTAAATTATCAGATAAAATGAAAAAGT ATGCAAGTATAATTGAAGAGTATGATATTCACATGGCAGATCAATCAAAATCTTATGGTT TCCCATTGGTTCATAGATTAATGGATGCCTGTCTTTCAACAGATATTAATATTGGTGGTG GAATTAATACAAATACTGCCACTACTATAGTAACCCATGTTTGGAATTTATTATTAACAT TAACAAGTGAAATCGATACAACAAATTATATTCAACAATTAAAAGAACAACAACAACAAC AACAACAACAAACACCTCAATTAAAGGAACAACAACAAAAACAACAACAATTAACAGAAC TTCAAAAACATACAAAATATCACACAAAACCAACTATGGCCCAATTATTAAAGAGATCTA TTTCATTTTTAGAGACTCAGTTTAGTCAAGTAATTGAAAGTCGTTTACCAAAACATTCAA ATGTATCATTACCACTGAATATTATTGTGGCATATATCAAGTCATTGAATCAATCACCAT TAACCGATAGTTCTGATGAAATTTATGAAGGTTGTTCCATTTGGTGTATCATTTACTATC TATTACGTAGTGGTTATACCTTAGAGGCATACCAATTTGCATNGAAAAATGGGATCCCGT TATTTCGATATTTATCACCAA
Length of 3' end seq.	741
Connected seq. ID	CFJ154P
Connected seq.	>CFJ154P.Seq AGTAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGA AAAAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAAT AATCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAG AAATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAAC TCCATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATA TGGATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCAC AGATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATAT CATTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTA TGAGCAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGG TCAAAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATC ATCATCATCATCATTATTTCAACAAAGCGTTCGT----------TGGTGGTAATATAAGT AGAGTTGGTGGTGGTAGTGGTGGTGGTATATATTCTCAAAGACAAACTGGTCAGAATGAA GATAGAACTAAATTATCAGATAAAATGAAAAAGTATGCAAGTATAATTGAAGAGTATGAT ATTCACATGGCAGATCAATCAAAATCTTATGGTTTCCCATTGGTTCATAGATTAATGGAT GCCTGTCTTTCAACAGATATTAATATTGGTGGTGGAATTAATACAAATACTGCCACTACT ATAGTAACCCATGTTTGGAATTTATTATTAACATTAACAAGTGAAATCGATACAACAAAT TATATTCAACAATTAAAAGAACAACAACAACAACAACAACAACAAACACCTCAATTAAAG GAACAACAACAAAAACAACAACAATTAACAGAACTTCAAAAACATACAAAATATCACACA AAACCAACTATGGCCCAATTATTAAAGAGATCTATTTCATTTTTAGAGACTCAGTTTAGT CAAGTAATTGAAAGTCGTTTACCAAAACATTCAAATGTATCATTACCACTGAATATTATT GTGGCATATATCAAGTCATTGAATCAATCACCATTAACCGATAGTTCTGATGAAATTTAT GAAGGTTGTTCCATTTGGTGTATCATTTACTATCTATTACGTAGTGGTTATACCTTAGAG GCATACCAATTTGCATNGAAAAATGGGATCCCGTTATTTCGATATTTATCACCAA
Length of connected seq.	1365
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas