>CFJ145 (CFJ145Q) /CSM/CF/CFJ1-B/CFJ145Q.Seq.d/
ATTTCTATATATATACATTTAACANTGATCAAAGCATTAGCAGCAGTTAAAAAACAAATN
GAAGAAATAAATGAATATGAAAAAAGAATTGGACCAGATTGTAATTTATCACAATTCCAA
GTAACATTAGAGAATTTTAATAAATTAAGACAAGCACAAANTGCAGTTATATTAGCTAAA
CAAAGTAAAGCAAATAGTGGTAAGATAGTTGAACCAACCGAAGCACAATTGGTAGCCAAT
TTCATTGAATGGTTAAAGGGTAAAGGATTTGATGAAAGTAAATGTAAAGTAAAGATTGAT
AGAAACACATCAGAGGGTACTGGTTTAGTTGCAACTCAAGACATTAAAGAGGGAGAGGAT
TTTGTAGAGATACCAAGCAACCTTTTCATTACGACTGCAGNAGCATTCCAGGGATTGGGA
AAACCACCAATTTTAGAGAATGACCGTTTAATTCAATCGATTCCAGGTATTTTATTATCA
ATTTTTTTAGTTAAGGAATTGTXXXXXXXXXX

ISIYIHLTXIKALAAVKKQXEEINEYEKRIGPDCNLSQFQVTLENFNKLRQAQXAVILAK
QSKANSGKIVEPTEAQLVANFIEWLKGKGFDESKCKVKIDRNTSEGTGLVATQDIKEGED
FVEIPSNLFITTAXAFQGLGKPPILENDRLIQSIPGILLSIFLVKEL---

Frame A:
ISIYIHLTXIKALAAVKKQXEEINEYEKRIGPDCNLSQFQVTLENFNKLRQAQXAVILAK
QSKANSGKIVEPTEAQLVANFIEWLKGKGFDESKCKVKIDRNTSEGTGLVATQDIKEGED
FVEIPSNLFITTAXAFQGLGKPPILENDRLIQSIPGILLSIFLVKEL---


Frame B:
flyiyi*x*skh*qqlknkxkk*mnmkkeldqiviyhnsk*h*rilin*dkhkxqly*ln
kvkqivvr*lnqpkhnw*pislng*rvkdlmkvnvk*rliethqrvlv*lqlktlkreri
l*ryqatfslrlqxhsrdwenhqf*rmtv*fnrfqvfyyqff*lrn---


Frame C:
fyiytfnxdqsisss*ktnxrnk*i*kknwtrl*fitipsniref**iktstxcsyis*t
k*sk*w*ds*tnrstigsqfh*mvkg*ri**k*m*skd**khirgywfscnsrh*rgrgf
crdtkqpfhydcxsipgigkttnfre*pfnsidsryfiinffs*gi---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN365 (VFN365Q) /CSM/VF/VFN3-C/VFN365Q.Seq.d/                        765   0.0
VFL377 (VFL377Q) /CSM/VF/VFL3-D/VFL377Q.Seq.d/                        765   0.0
VFK465 (VFK465Q) /CSM/VF/VFK4-C/VFK465Q.Seq.d/                        765   0.0
VFJ817 (VFJ817Q) /CSM/VF/VFJ8-A/VFJ817Q.Seq.d/                        765   0.0
VFJ270 (VFJ270Q) /CSM/VF/VFJ2-C/VFJ270Q.Seq.d/                        765   0.0
VFJ139 (VFJ139Q) /CSM/VF/VFJ1-B/VFJ139Q.Seq.d/                        765   0.0
VFI321 (VFI321Q) /CSM/VF/VFI3-A/VFI321Q.Seq.d/                        765   0.0
VFF214 (VFF214Q) /CSM/VF/VFF2-A/VFF214Q.Seq.d/                        765   0.0
VFE372 (VFE372Q) /CSM/VF/VFE3-C/VFE372Q.Seq.d/                        765   0.0
VFD341 (VFD341Q) /CSM/VF/VFD3-B/VFD341Q.Seq.d/                        765   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC138305|AC138305.2 Homo sapiens chromosome 16 clone RP11-2K6, complete sequence.    38   0.022  5
AC003977|AC003977.1 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-542B9, complete sequence.    38   0.055  4
AC117571|AC117571.3 Mus musculus clone RP23-18F8, WORKING DRAFT SEQUENCE, 9 unordered pieces.    42   0.32   9
AC119817|AC119817.1 Mus musculus clone RP23-85L4, WORKING DRAFT SEQUENCE, 15 ordered pieces.    34   1.1    7
AC103493|AC103493.7 Rattus norvegicus clone CH230-31C2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    32   1.1    7
BD265782|BD265782.1 Schizophrenia associated genes, proteins and biallelic markers.    32   1.6    7
AX150825|AX150825.1 Sequence 1 from Patent WO0140493.              32   1.6    7
AR308342|AR308342.1 Sequence 1 from patent US 6555316.             32   1.6    7
AR244312|AR244312.1 Sequence 1 from patent US 6476208.             32   1.6    7
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32   1.7    8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC046855_1(BC046855|pid:none) Xenopus laevis similar to chromoso...    42   0.008
CP001326_264(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    41   0.019
BT020357_1(BT020357|pid:none) Arabidopsis thaliana At2g18850 gen...    39   0.092
AC003673_4(AC003673|pid:none) Arabidopsis thaliana chromosome 2 ...    39   0.092
BT004057_1(BT004057|pid:none) Arabidopsis thaliana clone RAFL15-...    39   0.092
AF071544_1(AF071544|pid:none) Spinacia oleracea ribulose-1,5-bis...    38   0.12
AF071543_1(AF071543|pid:none) Spinacia oleracea ribulose-1,5-bis...    38   0.12
(P94026) RecName: Full=Ribulose-1,5 bisphosphate carboxylase/oxy...    38   0.16
AC068197_25(AC068197|pid:none) Genomic sequence for Arabidopsis ...    37   0.21
(Q9XI84) RecName: Full=Probable ribulose-1,5 bisphosphate carbox...    37   0.21

 psg: 0.64  gvh: 0.53  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for CFJ145 is cyt

>CFJ145F.Seq
ATTTCTATATATATACATTTAACANTGATCAAAGCATTAGCAGCAGTTAAAAAACAAATN
GAAGAAATAAATGAATATGAAAAAAGAATTGGACCAGATTGTAATTTATCACAATTCCAA
GTAACATTAGAGAATTTTAATAAATTAAGACAAGCACAAANTGCAGTTATATTAGCTAAA
CAAAGTAAAGCAAATAGTGGTAAGATAGTTGAACCAACCGAAGCACAATTGGTAGCCAAT
TTCATTGAATGGTTAAAGGGTAAAGGATTTGATGAAAGTAAATGTAAAGTAAAGATTGAT
AGAAACACATCAGAGGGTACTGGTTTAGTTGCAACTCAAGACATTAAAGAGGGAGAGGAT
TTTGTAGAGATACCAAGCAACCTTTTCATTACGACTGCAGNAGCATTCCAGGGATTGGGA
AAACCACCAATTTTAGAGAATGACCGTTTAATTCAATCGATTCCAGGTATTTTATTATCA
ATTTTTTTAGTTAAGGAATTGTNNNNNNNNNN