CFJ128
Library CF
(Link to library)
Clone ID CFJ128
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11615-1
Original site URL
Representative seq. ID CFJ128P
(Link to Original site)
Representative DNA sequence
>CFJ128 (CFJ128Q) /CSM/CF/CFJ1-B/CFJ128Q.Seq.d/
AATATAAATTTATATCTATATCACACATTGTTTTTATTTCATAATTTCATACACCCACTT
TTTTTTTTATGACACAAAANCAATTTAAATAAAAATAAATTTACCGCTCTTNGTAAAAAT
AANTAAAAAAAAAANCAATTAAAAAAXXXXXXXXXXTATTGCTGACGTTCCAAAANCAAG
TGGTGATACCGATGAGGTATTCAATGATTTCGAATTTGATTATATCCCAGATTCTGATGA
AATCTCTCATATTGAAAAAAATAAAAATCAATTACTTGCAATGATTGAACGTTCCAAATG
ATATCTCTTTAATTAATGACCCAAGACCAAATAAAAAATTATTAGTTTTAGATTTAGATC
ATACAATTTTAGATTTTAAAGATCAAGATGTTGAAAATATGAAAAGACCACATTTAGAAG
AATTTTTAGTACAATCCTATCAACATTATGATATTGGAATTTGGTCTCAAACTAGTTGGA
AATGGATTGAAATTAAATTAACAGAGTTGGGATTATTAACTAATCCACGTTTTAAAATTT
GTTTTGTAATGGATCAAACATTAATGTTTAAGGTAACAACCTATAGAACCATCAATGGTA
AAGAGAGAACTAAAATTAAACATAATGTAAAAGCATTGGAAAGNNTTTGGAAACATCNAC
ATTTAGGTNAATTCTTTAGTATGAGAAATACTNCACATGTTGATGATCTCTCCACAAACT
CTGCAATGAATCCAAAGAATGGTGTACATGTTCCACCTTTTACAATGTAAAGATGCTAAA
AAGTATGGCGACNANGTCTTATTCCATCTAACAAAA
sequence update 2001.11.22
Translated Amino Acid sequence
ykfisishivfis*fhtptfffmtqxqfk*k*iyrsx*k*XKKKXIKK---

---IADVPKXSGDTDEVFNDFEFDYIPDSDEISHIEKNKNQLLAMIERSK*ylfn**pkt
k*kiisfrfrsynfrf*rsrc*kyekttfrrifstilstl*ywnlvsn*lemd*n*inrv
giin*stf*nlfcngsninv*gnnl*nhqw*ren*n*t*cksigkxletstfrxil*yek
yxtc**slhklcneskewctcstfynvkmlksmatxsysi*q


Translated Amino Acid sequence (All Frames)
Frame A:
ninlylyhtlflfhnfihplffl*hkxnlnknkftalxknx*kkxqlk---

---yc*rskxkw*yr*giq*fri*lyprf**nlsy*kk*ksitcnd*tfqmisl*lmtqd
qikny*f*i*iiqf*ilkikmlki*kdhi*knf*ynpinimilefglklvgnglkln*qs
wdy*lihvlkfvl*wikh*clr*qpiepsmvkrelklnim*khwkxfgnixi*vnslv*e
ilhmlmispqtlq*iqrmvymfhllqckdakkygdxvlfhltk

Frame B:
i*iyiyithcfyfiisythfffydtkxi*ikinlplxvkixkkkxn*k---

---IADVPKXSGDTDEVFNDFEFDYIPDSDEISHIEKNKNQLLAMIERSK*ylfn**pkt
k*kiisfrfrsynfrf*rsrc*kyekttfrrifstilstl*ywnlvsn*lemd*n*inrv
giin*stf*nlfcngsninv*gnnl*nhqw*ren*n*t*cksigkxletstfrxil*yek
yxtc**slhklcneskewctcstfynvkmlksmatxsysi*q

Frame C:
ykfisishivfis*fhtptfffmtqxqfk*k*iyrsx*k*XKKKXIKK---

---lltfqxqvvipmrysmisnliisqilmkslilkkikinylq*lnvpndislindprp
nkkllvldldhtildfkdqdvenmkrphleeflvqsyqhydigiwsqtswkwieikltel
glltnprfkicfvmdqtlmfkvttyrtingkertkikhnvkalexxwkhxhlgxffsmrn
txhvddlstnsamnpkngvhvppftm*rc*kvwrxxlipsnk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFJ128 (CFJ128Q) /CSM/CF/CFJ1-B/CFJ128Q.Seq.d/ 1047 0.0
CHK657 (CHK657Q) /CSM/CH/CHK6-C/CHK657Q.Seq.d/ 952 0.0
SSK715 (SSK715Q) /CSM/SS/SSK7-A/SSK715Q.Seq.d/ 944 0.0
CFA370 (CFA370Q) /CSM/CF/CFA3-C/CFA370Q.Seq.d/ 944 0.0
CFF607 (CFF607Q) /CSM/CF/CFF6-A/CFF607Q.Seq.d/ 906 0.0
SFL188 (SFL188Q) /CSM/SF/SFL1-D/SFL188Q.Seq.d/ 902 0.0
SHE447 (SHE447Q) /CSM/SH/SHE4-B/SHE447Q.Seq.d/ 894 0.0
SFH658 (SFH658Q) /CSM/SF/SFH6-C/SFH658Q.Seq.d/ 888 0.0
CHC367 (CHC367Q) /CSM/CH/CHC3-C/CHC367Q.Seq.d/ 888 0.0
CFE567 (CFE567Q) /CSM/CF/CFE5-C/CFE567Q.Seq.d/ 888 0.0

own update 2002. 9.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 648 0.0 16
BX324216|BX324216.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-222K6. 36 2e-04 8
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence. 40 6e-04 12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 32 8e-04 15
BX511148|BX511148.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-174N20. 36 0.001 8
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 32 0.003 21
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 34 0.006 12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 30 0.007 14
BX572091|BX572091.1 Prochlorococcus marinus MED4 complete genome; segment 2/5. 34 0.009 12
U37541|U37541.1 Drosophila melanogaster complete mitochondrial genome. 32 0.018 6
dna update 2003.11.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_106(AC116984|pid:none) Dictyostelium discoideum chromos... 310 e-108
AE017344_321(AE017344|pid:none) Cryptococcus neoformans var. neo... 126 7e-28
(Q2KJD7) RecName: Full=Ubiquitin-like domain-containing CTD phos... 118 1e-27
AY893165_1(AY893165|pid:none) Synthetic construct Homo sapiens c... 118 1e-27
(Q8BGR9) RecName: Full=Ubiquitin-like domain-containing CTD phos... 117 1e-27
(Q28EX9) RecName: Full=Ubiquitin-like domain-containing CTD phos... 120 5e-26
CP001327_139(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 114 4e-24
EU961853_1(EU961853|pid:none) Zea mays clone 238650 ubiquitin-li... 111 2e-23
(Q8W3M6) RecName: Full=Ubiquitin-like domain-containing CTD phos... 110 5e-23
CR954201_293(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 102 1e-20
protein update 2009. 5.16
PSORT

psg: 0.62 gvh: 0.33 alm: 0.67 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: mitochondrial
24.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CFJ128 is mit

5' end seq. ID CFJ128F
5' end seq.
>CFJ128F.Seq
AATATAAATTTATATCTATATCACACATTGTTTTTATTTCATAATTTCATACACCCACTT
TTTTTTTTATGACACAAAANCAATTTAAATAAAAATAAATTTACCGCTCTTNGTAAAAAT
AANTAAAAAAAAAANCAATTAAAAAANNNNNNNNNN
Length of 5' end seq. 156
3' end seq. ID CFJ128Z
3' end seq.
>CFJ128Z.Seq
NNNNNNNNNNTATTGCTGACGTTCCAAAANCAAGTGGTGATACCGATGAGGTATTCAATG
ATTTCGAATTTGATTATATCCCAGATTCTGATGAAATCTCTCATATTGAAAAAAATAAAA
ATCAATTACTTGCAATGATTGAACGTTCCAAATGATATCTCTTTAATTAATGACCCAAGA
CCAAATAAAAAATTATTAGTTTTAGATTTAGATCATACAATTTTAGATTTTAAAGATCAA
GATGTTGAAAATATGAAAAGACCACATTTAGAAGAATTTTTAGTACAATCCTATCAACAT
TATGATATTGGAATTTGGTCTCAAACTAGTTGGAAATGGATTGAAATTAAATTAACAGAG
TTGGGATTATTAACTAATCCACGTTTTAAAATTTGTTTTGTAATGGATCAAACATTAATG
TTTAAGGTAACAACCTATAGAACCATCAATGGTAAAGAGAGAACTAAAATTAAACATAAT
GTAAAAGCATTGGAAAGNNTTTGGAAACATCNACATTTAGGTNAATTCTTTAGTATGAGA
AATACTNCACATGTTGATGATCTCTCCACAAACTCTGCAATGAATCCAAAGAATGGTGTA
CATGTTCCACCTTTTACAATGTAAAGATGCTAAAAAGTATGGCGACNANGTCTTATTCCA
TCTAACAAAA
Length of 3' end seq. 670
Connected seq. ID CFJ128P
Connected seq.
>CFJ128P.Seq
AATATAAATTTATATCTATATCACACATTGTTTTTATTTCATAATTTCATACACCCACTT
TTTTTTTTATGACACAAAANCAATTTAAATAAAAATAAATTTACCGCTCTTNGTAAAAAT
AANTAAAAAAAAAANCAATTAAAAAA----------TATTGCTGACGTTCCAAAANCAAG
TGGTGATACCGATGAGGTATTCAATGATTTCGAATTTGATTATATCCCAGATTCTGATGA
AATCTCTCATATTGAAAAAAATAAAAATCAATTACTTGCAATGATTGAACGTTCCAAATG
ATATCTCTTTAATTAATGACCCAAGACCAAATAAAAAATTATTAGTTTTAGATTTAGATC
ATACAATTTTAGATTTTAAAGATCAAGATGTTGAAAATATGAAAAGACCACATTTAGAAG
AATTTTTAGTACAATCCTATCAACATTATGATATTGGAATTTGGTCTCAAACTAGTTGGA
AATGGATTGAAATTAAATTAACAGAGTTGGGATTATTAACTAATCCACGTTTTAAAATTT
GTTTTGTAATGGATCAAACATTAATGTTTAAGGTAACAACCTATAGAACCATCAATGGTA
AAGAGAGAACTAAAATTAAACATAATGTAAAAGCATTGGAAAGNNTTTGGAAACATCNAC
ATTTAGGTNAATTCTTTAGTATGAGAAATACTNCACATGTTGATGATCTCTCCACAAACT
CTGCAATGAATCCAAAGAATGGTGTACATGTTCCACCTTTTACAATGTAAAGATGCTAAA
AAGTATGGCGACNANGTCTTATTCCATCTAACAAAA
Length of connected seq. 806
Full length Seq ID -
Full length Seq. -
Length of full length seq. -