CFJ116 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFJ116
Library	CF (Link to library)
Clone ID	CFJ116 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U14976-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFJ1-A/CFJ116Q.Seq.d/
Representative seq. ID	CFJ116E (Link to Original site)
Representative DNA sequence	>CFJ116 (CFJ116Q) /CSM/CF/CFJ1-A/CFJ116Q.Seq.d/ TATAGAAATTTTAATTAAGTAAAAAAAACGAAATGACAATTCTTTCAAAGGTATTAGTGG CAACGGGATTTTTATATGGTATTTACCATGTAAATAATTTAGTTCAAGAATATAAAGATT ATTCATTAGAACAAGGATACACACTTGCTGATTTTGGATTTGAACAACCAACAGGTTTAG CTCGTCCACAAAAGAAGAAATCAGCACGTGAATCAAATCAAGTACAACAATACACTGAAG AAGTTCAAATACTTTCACAACGTAGTAAAGTATTTATAGATAAAGGTGATTATAATAGTG CTCTTCCATGTTTGGAACGTATTGTTGAAATCTCTCAAGAATATCCACCATTTGCAAGTT ATGGTAGAAATGCAATCCTTTTTATAATTAAATTCTCTCAAGAAGCTGGTGATTATGATT TATATTCTAAATATGCAAAAGTTCTTATTGAATCAATTGATAATCCAGATAAAGGTGAAC TTGAAAGTATTGCTAAAATGGTAGCTGATTTTGCAAATAGATTATTGGAAGCTGATAAAA GTTTAAATGCTATTGATATAATTAAGTCATCAATGGAAAGATATAGTTTTCCAGATAAAG TTAAAGTTGATCTTATTTTATCTTTAGCCTCTTTATATAGAAATACTCCAAACTCAAGCA AAAAAGAATTAAAATCAATCTTAAAAGCAATAAAGATCGCTAAATCATCAACTACACCAA CTTTAATTATTAATTCTTTAATTACTTTATATGAATATTACTCAAAAGAAGGAAATTTCG AAAAAATGAGAGAAACTGTTTCAAGTGTTGAGGAACATTTAGATCCAAAATATTCAGTTT CAATTTACAAATATCTTGCAGAAAGTGCAAAGAGTTACGAACATTATGAAGACTATTATT CATTAGTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGCTGATCCAGTTAATAAAG AGAATATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTTAATGTCAACTGGTTCCA CAGAAAAAGCAAAGGAAATATACGATCAAATTAAACAAAATGAATATTTCTGTTTTGCAA CCAAATCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTCTGCCAAAGGTCTTCAAT CAATTTGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGCTGATACTATTTTAGTTG TTGATTTTGAAAATGTTGAAGAAAAGAAAGAAGTAGAAGAAGAAGAAAAAGTGAACAAGT TAAAGTNAACAAGTTAAAGTNAACAAGTTAAAGT
sequence update	2003. 5. 3
Translated Amino Acid sequence	kfLSKKNEMTILSKVLVATGFLYGIYHVNNLVQEYKDYSLEQGYTLADFGFEQPTGLA RPQKKKSARESNQVQQYTEEVQILSQRSKVFIDKGDYNSALPCLERIVEISQEYPPFASY GRNAILFIIKFSQEAGDYDLYSKYAKVLIESIDNPDKGELESIAKMVADFANRLLEADKS LNAIDIIKSSMERYSFPDKVKVDLILSLASLYRNTPNSSKKELKSILKAIKIAKSSTTPT LIINSLITLYEYYSKEGNFEKMRETVSSVEEHLDPKYSVSIYKYLAESAKSYEHYEDYYS LVDKLIGVLAKSEADPVNKENIVISVKLEKAETLMSTGSTEKAKEIYDQIKQNEYFCFAT KSKSKYLSVEHVTSAKGLQSICVGQKLNTTLPSADTILVVDFENVEEKKEVEEEEKVNKL KXTS*sxqvk
Translated Amino Acid sequence (All Frames)	Frame A: yrnfnvkktkqffqrywqrdfymvftmiifknikiihnkdthllildlnnqqv* lvhkrrnqhvnqikynntlkkfkyfhnvvkylikviiivlfhvwnvllkslknihhlqv mvemqsfllnslkklvimiyilnmqkfllnqliiqikvnlkvllkwlilqidywklik vmllilshqwkdivfqiklklilfylplyieilqtqakknnqskqrslnhqlhq lllilllymnitqkkeiskkeklfqvlrniiqniqfqftnilqkvqrvtnimktii hlinleyqnqkliqlikrilssllnrklklcqlvpqkkqrkytiklnkmnisvlq pnlnqsisllnmlplpkvfnqfvsvknillylqlilfllilkmlkkrkkkkkkkts sxqvkvnklk Frame B: ieilikkkrndnsfkgisgngifiwylpckfssrirlfirtrihtcfwittnrfs sstkeeistikssttihrssntftt*siyrrlcssmfgtycnlsristickl wkcnpfynilsrswlfifickssyin*srrtkycngsfckiigsk fkcyynvingkifsrsssyfifslfikysklkqkrikinlksnkdriinytn fnyffnyfiillkrrkfrknerncfkcgtfrskifsfnlqiscrkckelrtlrllf isinwsiskirsss*reychlciresnfnvnwfhrkskgnirsntkiflfcn qiikvslctcylcqrssinlcrskikyyftfsyyfscfkcrkersrrrrkseqv kvnklkxtss Frame C: kfLSKKNEMTILSKVLVATGFLYGIYHVNNLVQEYKDYSLEQGYTLADFGFEQPTGLA RPQKKKSARESNQVQQYTEEVQILSQRSKVFIDKGDYNSALPCLERIVEISQEYPPFASY GRNAILFIIKFSQEAGDYDLYSKYAKVLIESIDNPDKGELESIAKMVADFANRLLEADKS LNAIDIIKSSMERYSFPDKVKVDLILSLASLYRNTPNSSKKELKSILKAIKIAKSSTTPT LIINSLITLYEYYSKEGNFEKMRETVSSVEEHLDPKYSVSIYKYLAESAKSYEHYEDYYS LVDKLIGVLAKSEADPVNKENIVISVKLEKAETLMSTGSTEKAKEIYDQIKQNEYFCFAT KSKSKYLSVEHVTSAKGLQSICVGQKLNTTLPSADTILVVDFENVEEKKEVEEEEKVNKL KXTS*sxqvk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFJ116 (CFJ116Q) /CSM/CF/CFJ1-A/CFJ116Q.Seq.d/ 2365 0.0 VFM529 (VFM529Q) /CSM/VF/VFM5-B/VFM529Q.Seq.d/ 1312 0.0 VFO782 (VFO782Q) /CSM/VF/VFO7-D/VFO782Q.Seq.d/ 1215 0.0 VHA688 (VHA688Q) /CSM/VH/VHA6-D/VHA688Q.Seq.d/ 1197 0.0 VFO882 (VFO882Q) /CSM/VF/VFO8-D/VFO882Q.Seq.d/ 1174 0.0 SFE538 (SFE538Q) /CSM/SF/SFE5-B/SFE538Q.Seq.d/ 1174 0.0 SFH647 (SFH647Q) /CSM/SF/SFH6-B/SFH647Q.Seq.d/ 1126 0.0 VFM411 (VFM411Q) /CSM/VF/VFM4-A/VFM411Q.Seq.d/ 1118 0.0 AFL783 (AFL783Q) /CSM/AF/AFL7-D/AFL783Q.Seq.d/ 1108 0.0 CHE433 (CHE433Q) /CSM/CH/CHE4-B/CHE433Q.Seq.d/ 1104 0.0
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AB063521\|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 34 0.041 14 BX004888\|BX004888.7 Zebrafish DNA sequence from clone DKEY-8F21 in linkage group 1. 38 0.073 10 AC004157\|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, * SEQUENCING IN PROGRESS *, 2 unordered pieces. 36 0.074 9 AP003187\|AP003187.2 Clostridium perfringens str. 13 DNA, complete genome, section 3/10. 36 0.080 14 AE016968\|AE016968.1 Mycoplasma gallisepticum strain R section 2 of 4 of the complete genome. 38 0.20 11 CC195284\|CC195284.1 CH261-111J7 CH261 Gallus gallus genomic clone CH261-111J7, DNA sequence. 48 0.28 1 AL929355\|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 36 0.37 11 AL034558\|AL034558.3 Plasmodium falciparum MAL3P2. 40 0.40 9 AF081950\|AF081950.1 Dictyostelium discoideum developmental protein DG1112 (DG1112) gene, partial cds. 44 0.43 2 BZ395267\|BZ395267.1 EINCS30TF EI_10_12_KB Entamoeba invadens genomic clone EINCS30, DNA sequence. 40 0.46 2
dna update	2003. 9. 7
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000395_557(CP000395\|pid:none) Borrelia afzelii PKo, complete g... 39 0.38 AL590451_50(AL590451\|pid:none) chromosome IX of strain GB-M1 of ... 39 0.38 CP000416_142(CP000416\|pid:none) Lactobacillus brevis ATCC 367, c... 38 0.65 CP000048_315(CP000048\|pid:none) Borrelia hermsii DAH, complete g... 37 1.1 AJ493264_1(AJ493264\|pid:none) Acipenser baeri mRNA for keratin t... 37 1.5 AM502243_207(AM502243\|pid:none) Leishmania infantum chromosome 25. 36 2.5 CP001013_1954(CP001013\|pid:none) Leptothrix cholodnii SP-6, comp... 36 2.5 T28676(T28676;A45521)rhoptry protein - Plasmodium yoelii (fragme... 35 4.2 AF315285_1(AF315285\|pid:none) Plasmodium yoelii yoelii p235 rhop... 35 4.2 AF315287_1(AF315287\|pid:none) Plasmodium yoelii yoelii p235 rhop... 35 4.2
protein update	2008.11. 8
PSORT	psg: 0.83 gvh: 0.51 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 28.0 %: nuclear 8.0 %: mitochondrial 8.0 %: peroxisomal >> prediction for CFJ116 is cyt
5' end seq. ID	CFJ116F
5' end seq.	>CFJ116F.Seq TATAGAAATTTTAATTAAGTAAAAAAAACGAAATGACAATTCTTTCAAAGGTATTAGTGG CAACGGGATTTTTATATGGTATTTACCATGTAAATAATTTAGTTCAAGAATATAAAGATT ATTCATTAGAACAAGGATACACACTTGCTGATTTTGGATTTGAACAACCAACAGGTTTAG CTCGTCCACAAAAGAAGAAATCAGCACGTGAATCAAATCAAGTACAACAATACACTGAAG AAGTTCAAATACTTTCACAACGTAGTAAAGTATTTATAGATAAAGGTGATTATAATAGTG CTCTTCCATGTTTGGAACGTATTGTTGAAATCTCTCAAGAATATCCACCATTTGCAAGTT ATGGTAGAAATGCAATCCTTTTTATAATTAAATTCTCTCAAGAAGCTGGTGATTATGATT TATATTCTAAATATGCAAAAGTTCTTATTGAATCAATTGATAATCCAGATAAAGGTGAAC TTGAAAGTATTGCTAAAATGGTAGCTGATTTTGCAAATAGATTATTGGAAGCTGATAAAA GTTTAAATGCTATTGATATAATTAAGTCATCAATGGAAAGATATAGTTTTCCAGATAAAG TTAAAGTTGATCTTATTTTATCTTTAGCCTCTTTATATAGAAATACTCCAAACTCAAGCA AAAAAGAATTAAAATCAATCTTAAAAGCAATAAAGATCGCTAAATCATCANNNNNNNNNN
Length of 5' end seq.	720
3' end seq. ID	CFJ116Z
3' end seq.	>CFJ116Z.Seq NNNNNNNNNNGTTGATCTTATTTTATCTTTAGCCTCTTTATATAGAAATACTCCAAACTC AAGCAAAAAAGAATTAAAATCAATCTTAAAAGCAATAAAGATCGCTAAATCATCAACTAC ACCAACTTTAATTATTAATTCTTTAATTACTTTATATGAATATTACTCAAAAGAAGGAAA TTTCGAAAAAATGAGAGAAACTGTTTCAAGTGTTGAGGAACATTTAGATCCAAAATATTC AGTTTCAATTTACAAATATCTTGCAGAAAGTGCAAAGAGTTACGAACATTATGAAGACTA TTATTCATTAGTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGCTGATCCAGTTAA TAAAGAGAATATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTTAATGTCAACTGG TTCCACAGAAAAAGCAAAGGAAATATACGATCAAATTAAACAAAATGAATATTTCTGTTT TGCAACCAAATCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTCTGCCAAAGGTCT TCAATCAATTTGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGCTGATACTATTTT AGTTGTTGATTTTGAAAATGTTGAAGAAAAGAAAGAAGTAGAAGAAGAAGAAAAAGTGAA CAAGTTAAAGTNAACAAGTTAAAGTNAACAAGTTAAAGT
Length of 3' end seq.	699
Connected seq. ID	CFJ116P
Connected seq.	>CFJ116P.Seq TATAGAAATTTTAATTAAGTAAAAAAAACGAAATGACAATTCTTTCAAAGGTATTAGTGG CAACGGGATTTTTATATGGTATTTACCATGTAAATAATTTAGTTCAAGAATATAAAGATT ATTCATTAGAACAAGGATACACACTTGCTGATTTTGGATTTGAACAACCAACAGGTTTAG CTCGTCCACAAAAGAAGAAATCAGCACGTGAATCAAATCAAGTACAACAATACACTGAAG AAGTTCAAATACTTTCACAACGTAGTAAAGTATTTATAGATAAAGGTGATTATAATAGTG CTCTTCCATGTTTGGAACGTATTGTTGAAATCTCTCAAGAATATCCACCATTTGCAAGTT ATGGTAGAAATGCAATCCTTTTTATAATTAAATTCTCTCAAGAAGCTGGTGATTATGATT TATATTCTAAATATGCAAAAGTTCTTATTGAATCAATTGATAATCCAGATAAAGGTGAAC TTGAAAGTATTGCTAAAATGGTAGCTGATTTTGCAAATAGATTATTGGAAGCTGATAAAA GTTTAAATGCTATTGATATAATTAAGTCATCAATGGAAAGATATAGTTTTCCAGATAAAG TTAAAGTTGATCTTATTTTATCTTTAGCCTCTTTATATAGAAATACTCCAAACTCAAGCA AAAAAGAATTAAAATCAATCTTAAAAGCAATAAAGATCGCTAAATCATCA---------- GTTGATCTTATTTTATCTTTAGCCTCTTTATATAGAAATACTCCAAACTCAAGCAAAAAA GAATTAAAATCAATCTTAAAAGCAATAAAGATCGCTAAATCATCAACTACACCAACTTTA ATTATTAATTCTTTAATTACTTTATATGAATATTACTCAAAAGAAGGAAATTTCGAAAAA ATGAGAGAAACTGTTTCAAGTGTTGAGGAACATTTAGATCCAAAATATTCAGTTTCAATT TACAAATATCTTGCAGAAAGTGCAAAGAGTTACGAACATTATGAAGACTATTATTCATTA GTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGCTGATCCAGTTAATAAAGAGAAT ATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTTAATGTCAACTGGTTCCACAGAA AAAGCAAAGGAAATATACGATCAAATTAAACAAAATGAATATTTCTGTTTTGCAACCAAA TCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTCTGCCAAAGGTCTTCAATCAATT TGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGCTGATACTATTTTAGTTGTTGAT TTTGAAAATGTTGAAGAAAAGAAAGAAGTAGAAGAAGAAGAAAAAGTGAACAAGTTAAAG TNAACAAGTTAAAGTNAACAAGTTAAAGT
Length of connected seq.	1399
Full length Seq ID	CFJ116E
Full length Seq.	>CFJ116E.Seq TATAGAAATTTTAATTAAGTAAAAAAAACGAAATGACAATTCTTTCAAAGGTATTAGTGG CAACGGGATTTTTATATGGTATTTACCATGTAAATAATTTAGTTCAAGAATATAAAGATT ATTCATTAGAACAAGGATACACACTTGCTGATTTTGGATTTGAACAACCAACAGGTTTAG CTCGTCCACAAAAGAAGAAATCAGCACGTGAATCAAATCAAGTACAACAATACACTGAAG AAGTTCAAATACTTTCACAACGTAGTAAAGTATTTATAGATAAAGGTGATTATAATAGTG CTCTTCCATGTTTGGAACGTATTGTTGAAATCTCTCAAGAATATCCACCATTTGCAAGTT ATGGTAGAAATGCAATCCTTTTTATAATTAAATTCTCTCAAGAAGCTGGTGATTATGATT TATATTCTAAATATGCAAAAGTTCTTATTGAATCAATTGATAATCCAGATAAAGGTGAAC TTGAAAGTATTGCTAAAATGGTAGCTGATTTTGCAAATAGATTATTGGAAGCTGATAAAA GTTTAAATGCTATTGATATAATTAAGTCATCAATGGAAAGATATAGTTTTCCAGATAAAG TTAAAGTTGATCTTATTTTATCTTTAGCCTCTTTATATAGAAATACTCCAAACTCAAGCA AAAAAGAATTAAAATCAATCTTAAAAGCAATAAAGATCGCTAAATCATCAACTACACCAA CTTTAATTATTAATTCTTTAATTACTTTATATGAATATTACTCAAAAGAAGGAAATTTCG AAAAAATGAGAGAAACTGTTTCAAGTGTTGAGGAACATTTAGATCCAAAATATTCAGTTT CAATTTACAAATATCTTGCAGAAAGTGCAAAGAGTTACGAACATTATGAAGACTATTATT CATTAGTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGCTGATCCAGTTAATAAAG AGAATATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTTAATGTCAACTGGTTCCA CAGAAAAAGCAAAGGAAATATACGATCAAATTAAACAAAATGAATATTTCTGTTTTGCAA CCAAATCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTCTGCCAAAGGTCTTCAAT CAATTTGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGCTGATACTATTTTAGTTG TTGATTTTGAAAATGTTGAAGAAAAGAAAGAAGTAGAAGAAGAAGAAAAAGTGAACAAGT TAAAGTNAACAAGTTAAAGTNAACAAGTTAAAGT
Length of full length seq.	1294

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas