>CFI752 (CFI752Q) /CSM/CF/CFI7-C/CFI752Q.Seq.d/
ATGCTTCTTATATTTTTTTTTGAGTATAAAAGAGTTTTCTTTTTTTTTATTTTTTTTTTA
TTTTATTTTTATTTATAGAATCAATAATAATAATAAATAAGTAAAAATAAAAAAATGAAA
TTAATAAATCTTGTAATTNATTTTTTTCTTTTTGGAATAGTATATTCTCAACCACCACAA
CCACACTATGGNGTATTTGAATTATCAGCATTACGTGGNGGAGAAAATAAACTTCTGTAT
AGGGGTGCCAATCTAAAAGCTTTTTNTCAAACACCAGCTAGACCAGGAGTGATTGTTACT
TTTTTCAGATACAATGGAGGTATTGACATTTACTATTCCCATAGGATACAAATTGTTGCA
AATCTTGAANAGTCAGCGCGTGTAATGACCCAAACTCCAAATAATATGGCTACTAGNGGT
AGAATTGTTTCATATGCTTATCAAGAGATATCTACCCAGGTTTTCAATGGACTAAATGTT
GGCAATTTGAATGCTCTAATCAATGGACCCAATTTAGTAACACCAGCTGGGCCATTTATT
CCACATGGAAGGXXXXXXXXXXTCCTGCAGGATTATTGGGATTAGTTAGTGAAGGTATTA
AAGAGGCTGCCAACGGTGTTAAAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGTA
TTTTCAGCCATGGTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTTG
AAAATGAAGGTAAAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAATG
ATGGTAAGGCAGTTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGTA
AGGCAGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAG
TTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTCA
ATGCTGGTGGATCTGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCTG
GTGAAACTGTTGTTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAAA
CTGTTATTGATTCCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCAA
TTGCTGATATTGAAAAAAATGGTGCACAATTTGCAAGAGGTGTTGTAGAAATGGGTGAAG
CAGCTGGTGATGTTGTTGAAGAAATGGCTAAGTCTCAGCTGGTAGGTTAATAGTTGAAGT
TCT

mllifffeykrvffffifflfyfyl*nq****ISKNKKMKLINLVIXFFLFGIVYSQPPQ
PHYGVFELSALRGGENKLLYRGANLKAFXQTPARPGVIVTFFRYNGGIDIYYSHRIQIVA
NLEXSARVMTQTPNNMATXGRIVSYAYQEISTQVFNGLNVGNLNALINGPNLVTPAGPFI
PHGR---

---PAGLLGLVSEGIKEAANGVKVTGVNIWNKAKSIFSHGKEAASSKTSAAVVKVENEGK
AVVKAGESVVSTVKNDGKAVVNAGESVVTSVKNEGKAVVNAGESVVTSVKNNGKAVVNAG
ESVVTSVKNEGKAVVNAGGSVVTSVKNNGKAVVNAGETVVQTVKKEASVIVKTGETVIDS
TRKGGAAFVSEGGAAIADIEKNGAQFARGVVEMGEAAGDVVEEMAKSQLVG**lkf

Frame A:
mllifffeykrvffffifflfyfyl*nq****ISKNKKMKLINLVIXFFLFGIVYSQPPQ
PHYGVFELSALRGGENKLLYRGANLKAFXQTPARPGVIVTFFRYNGGIDIYYSHRIQIVA
NLEXSARVMTQTPNNMATXGRIVSYAYQEISTQVFNGLNVGNLNALINGPNLVTPAGPFI
PHGR---

---scriigis**ry*rgcqrc*shwckyle*sqkyfqpw*rscq**nkccrcks*k*r*
sscqsw*irckycek*w*gscqcwriccnlcek*r*gscqcw*ircnlckk*w*gscqcw
*ircnlcek*r*gscqcwwiccnlckk*w*gscqcw*nccsncekrslshcenw*ncy*f
hkkrrrcicf*rwccnc*y*kkwctickrccrng*ssw*cc*rng*vsagrlivev

Frame B:
cflyfflsikefsfflfffyfifiyrinnnnk*vkikk*n**il*xifffle*yilnhhn
htmxylnyqhyvxekinfcigvpi*klfxkhqldqe*lllfsdtmevltftipigykllq
ilxsqrv**pklqiiwllxvelfhmlikrylprfsmd*mlai*ml*smdpi**hqlghlf
hme---

---PAGLLGLVSEGIKEAANGVKVTGVNIWNKAKSIFSHGKEAASSKTSAAVVKVENEGK
AVVKAGESVVSTVKNDGKAVVNAGESVVTSVKNEGKAVVNAGESVVTSVKNNGKAVVNAG
ESVVTSVKNEGKAVVNAGGSVVTSVKNNGKAVVNAGETVVQTVKKEASVIVKTGETVIDS
TRKGGAAFVSEGGAAIADIEKNGAQFARGVVEMGEAAGDVVEEMAKSQLVG**lkf

Frame C:
asyiff*v*ksflffyfffilflfiesiiiink*k*kneinkscnxffsfwnsifstttt
tlwxi*iisitwxrk*tsv*gcqsksfxsnts*trsdcyffqiqwry*hllfp*dtncck
s*xvsacndpnsk*ygy*x*ncficlsrdiypgfqwtkcwqfecsnqwtqfsntswaiys
twk---

---lqdywd*lvkvlkrlptvlkslv*ifgikpkvfsamvkklpvvkqvlpl*klkmkvk
qlsklvnpl*vl*kmmvrqlsmlanll*pl*kmkvrqlsmlvnpl*pl*kimvrqlsmlv
npl*pl*kmkvrqlsmlvdll*pl*kimvrqlsmlvkllfkl*kkkpqsl*klvklllip
qekealhlflkvvlqllilkkmvhnlqevl*kwvkqlvmllkkwlslsw*vns*ss

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI752 (CFI752Q) /CSM/CF/CFI7-C/CFI752Q.Seq.d/                       2034   0.0
CHD107 (CHD107Q) /CSM/CH/CHD1-A/CHD107Q.Seq.d/                       1322   0.0
CFG137 (CFG137Q) /CSM/CF/CFG1-B/CFG137Q.Seq.d/                       1277   0.0
CFI211 (CFI211Q) /CSM/CF/CFI2-A/CFI211Q.Seq.d/                       1263   0.0
CFH413 (CFH413Q) /CSM/CF/CFH4-A/CFH413Q.Seq.d/                       1263   0.0
CHC855 (CHC855Q) /CSM/CH/CHC8-C/CHC855Q.Seq.d/                       1251   0.0
SFG511 (SFG511Q) /CSM/SF/SFG5-A/SFG511Q.Seq.d/                       1217   0.0
CHD584 (CHD584Q) /CSM/CH/CHD5-D/CHD584Q.Seq.d/                       1203   0.0
CHC426 (CHC426Q) /CSM/CH/CHC4-B/CHC426Q.Seq.d/                       1156   0.0
SFF453 (SFF453Q) /CSM/SF/SFF4-C/SFF453Q.Seq.d/                       1124   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BZ280484|BZ280484.1 CH230-480C10.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-480C10, genomic survey sequence.    42   0.20   2
AF489932|AF489932.1 Dengue Virus Type 2 strain BR64022, complete genome.    46   1.2    1
AF100466|AF100466.2 Dengue virus type 2 strain Mara4 polyprotein gene, complete cds.    46   1.2    1
CA305082|CA305082.1 As_adfo_27F02_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_27F02 5', mRNA sequence.    46   1.2    1
CA304740|CA304740.1 As_adfo_21G05_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_21G05 5', mRNA sequence.    46   1.2    1
AC128439|AC128439.2 Rattus norvegicus clone CH230-206J7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    32   2.1    2
AC095129|AC095129.6 Rattus norvegicus clone CH230-8E13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    32   2.1    2
AC094118|AC094118.6 Rattus norvegicus clone CH230-2O2, WORKING DRAFT SEQUENCE, 2 unordered pieces.    32   2.1    2
AP004287|AP004287.2 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1471H7.    34   2.8    8
CB732922|CB732922.1 AMGNNUC:NRHY5-00247-B5-A W Rat hypothalamus (10471) Rattus norvegicus cDNA clone nrhy5-00247-b5 5', mRNA sequence.    32   3.0    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016817_40(AE016817|pid:none) Ashbya gossypii (= Eremothecium g...    68   6e-10
CR767821_118(CR767821|pid:none) Ehrlichia ruminantium strain Wel...    64   8e-09
CR925678_108(CR925678|pid:none) Ehrlichia ruminantium str. Welge...    64   1e-08
CP000617_291(CP000617|pid:none) Burkholderia vietnamiensis G4 pl...    58   8e-07
AE016830_326(AE016830|pid:none) Enterococcus faecalis V583, comp...    57   1e-06
AF308673_2(AF308673|pid:none) Cowdria ruminantium clone 26hw hyp...    57   1e-06
AE014075_3573(AE014075|pid:none) Escherichia coli CFT073, comple...    57   2e-06
AE005674_2993(AE005674|pid:none) Shigella flexneri 2a str. 301, ...    57   2e-06
AF200692_21(AF200692|pid:none) Shigella flexneri 2a she pathogen...    57   2e-06
CU928145_3285(CU928145|pid:none) Escherichia coli 55989 chromoso...    56   2e-06

 psg: 0.99  gvh: 0.72  alm: 0.49  top: 0.17  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for CFI752 is exc

>CFI752F.Seq
ATGCTTCTTATATTTTTTTTTGAGTATAAAAGAGTTTTCTTTTTTTTTATTTTTTTTTTA
TTTTATTTTTATTTATAGAATCAATAATAATAATAAATAAGTAAAAATAAAAAAATGAAA
TTAATAAATCTTGTAATTNATTTTTTTCTTTTTGGAATAGTATATTCTCAACCACCACAA
CCACACTATGGNGTATTTGAATTATCAGCATTACGTGGNGGAGAAAATAAACTTCTGTAT
AGGGGTGCCAATCTAAAAGCTTTTTNTCAAACACCAGCTAGACCAGGAGTGATTGTTACT
TTTTTCAGATACAATGGAGGTATTGACATTTACTATTCCCATAGGATACAAATTGTTGCA
AATCTTGAANAGTCAGCGCGTGTAATGACCCAAACTCCAAATAATATGGCTACTAGNGGT
AGAATTGTTTCATATGCTTATCAAGAGATATCTACCCAGGTTTTCAATGGACTAAATGTT
GGCAATTTGAATGCTCTAATCAATGGACCCAATTTAGTAACACCAGCTGGGCCATTTATT
CCACATGGAAGGNNNNNNNNNN

>CFI752Z.Seq
NNNNNNNNNNTCCTGCAGGATTATTGGGATTAGTTAGTGAAGGTATTAAAGAGGCTGCCA
ACGGTGTTAAAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGTATTTTCAGCCATG
GTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTTGAAAATGAAGGTA
AAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAATGATGGTAAGGCAG
TTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTCA
ATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCTG
GTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTCAATGCTGGTGGAT
CTGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCTGGTGAAACTGTTG
TTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAAACTGTTATTGATT
CCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCAATTGCTGATATTG
AAAAAAATGGTGCACAATTTGCAAGAGGTGTTGTAGAAATGGGTGAAGCAGCTGGTGATG
TTGTTGAAGAAATGGCTAAGTCTCAGCTGGTAGGTTAATAGTTGAAGTTCT

>CFI752P.Seq
ATGCTTCTTATATTTTTTTTTGAGTATAAAAGAGTTTTCTTTTTTTTTATTTTTTTTTTA
TTTTATTTTTATTTATAGAATCAATAATAATAATAAATAAGTAAAAATAAAAAAATGAAA
TTAATAAATCTTGTAATTNATTTTTTTCTTTTTGGAATAGTATATTCTCAACCACCACAA
CCACACTATGGNGTATTTGAATTATCAGCATTACGTGGNGGAGAAAATAAACTTCTGTAT
AGGGGTGCCAATCTAAAAGCTTTTTNTCAAACACCAGCTAGACCAGGAGTGATTGTTACT
TTTTTCAGATACAATGGAGGTATTGACATTTACTATTCCCATAGGATACAAATTGTTGCA
AATCTTGAANAGTCAGCGCGTGTAATGACCCAAACTCCAAATAATATGGCTACTAGNGGT
AGAATTGTTTCATATGCTTATCAAGAGATATCTACCCAGGTTTTCAATGGACTAAATGTT
GGCAATTTGAATGCTCTAATCAATGGACCCAATTTAGTAACACCAGCTGGGCCATTTATT
CCACATGGAAGG----------TCCTGCAGGATTATTGGGATTAGTTAGTGAAGGTATTA
AAGAGGCTGCCAACGGTGTTAAAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGTA
TTTTCAGCCATGGTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTTG
AAAATGAAGGTAAAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAATG
ATGGTAAGGCAGTTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGTA
AGGCAGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAG
TTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTCA
ATGCTGGTGGATCTGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCTG
GTGAAACTGTTGTTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAAA
CTGTTATTGATTCCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCAA
TTGCTGATATTGAAAAAAATGGTGCACAATTTGCAAGAGGTGTTGTAGAAATGGGTGAAG
CAGCTGGTGATGTTGTTGAAGAAATGGCTAAGTCTCAGCTGGTAGGTTAATAGTTGAAGT
TCT