CFI751 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFI751
Library	CF (Link to library)
Clone ID	CFI751 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U12602-1\|Contig-U16365-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFI7-C/CFI751Q.Seq.d/
Representative seq. ID	CFI751P (Link to Original site)
Representative DNA sequence	>CFI751 (CFI751Q) /CSM/CF/CFI7-C/CFI751Q.Seq.d/ ATTTTACAACTATGCAAATAGAAAGATCATCTCAAAGAAACACAAATACAGAATCTCACA AACACACACAGAATAACGCAACTTTCCAGTGTTTTTAATAAATAAATAAATAATAAATAT ATATAAGTCAAAGAAAATGGACTCTAAATGGTTTTTTATTGTATTAATAAGTTTTTTATT GGTTCTTCCAAGTATAGTCACACCTTATAGAAAGAGTGTTGAAATAACAAATGAAGAACC ACAAAGAGATATATATCAATTAGAAAAAACTAATAAGATGGCAGAAGTAGGAGATTTGGG TGTTGCTTCATTTTTAAATATTTTAGATACCAGCAGTTCTAGTTCAAGCTCAAGCAGTTC TAGTTCAAGCAGTTCTAGTTCCAGCTCAAGCAGTTCTAGTTCAAGCAGCTCTTCATCAAG CAGTTCAAGTTCTTCTTCAAGCAGTTCAAGCTCTTCATCAAGCAGCTCAAGCTCTTCAAG CAGTTCATCATCATCATCATCATCATCATCATCATCATCATCATCAAGCAGCTCAAGCTC ATCATCATCAAGCAGCTCAAGCTCATCATCATCAAGCAGCTCAAGCTCAAGCTCATCATC AAGTAGCTCAAGCTCAAGCTCATCATCAAGCAGCTCAAGCTCATCAAGCAGCTCATCATC ATCATCATCAAGCAGCTCAAGTTCATCATCTTCAAGCTCTTCATCAAGCTCAAGTAGCTC AAGCTCTTCATCAAGCTCAAGCAGCTCAAGCTCTTCATCAAGTTCAAGTAGCTCATCTAG TTCAAGCTCTTCATCAAGCXXXXXXXXXXATNATCATCATCATCATCATCATCATCATCA TCATCATCATNAAGNNNATGATNATCATCATCATNAAGANGANGATGATCATCATCATNA AGANGAAGNNNANGATGATCATCATGAAGANGAAGANGAAGNTNATNATCANGAAGCNGA AGNTNATNANGNAGCNNATCATCATCATCATCATNNAGCNGAAGATGATNATCATCATGA TNTTNNTCANGATNANGTAGANGANGNTGNTNATCANGATGAAGNAGCNGAAGNTGTTNA TCANGNTGAAGTAGTTGATNNNGTNGNNGNTGTTNNTCANGANGANGNTNCTNANGNNNA AGCAGTNGNTNANGNNNCTNANGNNGAAGCAGNNGNTNANGNAGTNGNTNANGNTNCTNN NGNNGNAGCAGTNGNTNANGNTNCTCNNGCNNNAGCTGNTNNTCANGNNGANGNNGANGC NGNAGCNNCTCNTCANGNNNNAGCNNNTNATCANNNAGCNNNTCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCAAGCTCAAGCAGCTCATCAAGT TCAAGCTCAAGCAGTTCTAGCTCAAGCAGTTCTAGTTCAAGGGAGAAAACTGAATTTAAA ANATATAATATAATAATAATAATAATAAAACTCGACCACCAAATTAAAAA
sequence update	2001.11.22
Translated Amino Acid sequence	fynyanrkiiskkhkyrisqthternfpvflinkIINIYKSKKMDSKWFFIVLISFLL VLPSIVTPYRKSVEITNEEPQRDIYQLEKTNKMAEVGDLGVASFLNILDTSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSS--- ---XHHHHHHHHHHHHXXXDXHHHXXXDDHHHXXEXXDDHHEXEXEXXXXEAEXXXXAXH HHHHXAEDDXHHDXXXDXVXXXXXXDEXAEXVXXXEVVDXVXXVXXXXXXXXXAVXXXXX XEAXXXXVXXXXXXXAVXXXXXAXAXXXXXXXAXAXXXXXAXXXXAXHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQAQAAHQVQAQAVLA QAVLVQGRKLNLKXII******nsttklk
Translated Amino Acid sequence (All Frames)	Frame A: ilqlckkdhlketqiqnltnthritqlssvfnkinnkyivkenglmvfycinkffi gsskyshtlkecnnkrttkryisirkndgrsrrfgccfifkyfryqqffklkqf fkqffqlkqffkqlfikqfkfffkqfklfikqlklfkqfiiiiiiiiiiiiikqlkl iiikqlkliiikqlklkliiklklkliikqlklikqliiiiikqlkfiifklfiklkl klfiklkqlklfikfklifklfik--- ---xiiiiiiiiiiiixkxmxiiixkxxmiiixkxkxxmiimkxkxkxxixkxkxxxxxi iiiixxxkmxiimxxxxxxxxxxixmkxxkxxixxklxxxxxxxxxxxlxxkqxxxxl xxkqxxxxxxxxlxxxqxxxxlxxxlxxxxxxxxxxlxxxxxxixxxxiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiklkqlikfklkqf lkqffkgenixiynnnnnktrppnk Frame B: fynyanrkiiskkhkyrisqthternfpvflinkIINIYKSKKMDSKWFFIVLISFLL VLPSIVTPYRKSVEITNEEPQRDIYQLEKTNKMAEVGDLGVASFLNILDTSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSS--- ---xssssssssssssxxxxsssxrxxsssxrxxxxssrxrxxxxsxsxxxxxsxs ssssxsxrxssxxsxxxrxxxxsxxsxxcxsxssxxxxcxsxxxxxxxssxxxxx xxsxxxxsxxxxxxxssxxxxsxxsxxsxxxxxxsxssxxsxxsxsxsssssssssssss ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss ssssssrektefkxyniiiiiikldhqik Frame C: fttmqierssqrntnteshkhtqnnatfqcfinkiyisqrkwtlngflly*vfyw ffqvshliervlkqmknhkeiyinkklirwqkeiwvllhfifipavlvqaqavl vqavlvpaqavlvqaalhqavqvllqavqalhqaaqalqavhhhhhhhhhhhhhqaaqah hhqaaqahhhqaaqaqahhqvaqaqahhqaaqahqaahhhhhqaaqvhhlqalhqaqvaq alhqaqaaqalhqvqvahlvqalhq--- ---XHHHHHHHHHHHHXXXDXHHHXXXDDHHHXXEXXDDHHEXEXEXXXXEAEXXXXAXH HHHHXAEDDXHHDXXXDXVXXXXXXDEXAEXVXXXEVVDXVXXVXXXXXXXXXAVXXXXX XEAXXXXVXXXXXXXAVXXXXXAXAXXXXXXXAXAXXXXXAXXXXAXHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQAQAAHQVQAQAVLA QAVLVQGRKLNLKXII*****nsttklk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFB296 (VFB296Q) /CSM/VF/VFB2-D/VFB296Q.Seq.d/ 710 0.0 SFJ767 (SFJ767Q) /CSM/SF/SFJ7-C/SFJ767Q.Seq.d/ 710 0.0 CFI751 (CFI751Q) /CSM/CF/CFI7-C/CFI751Q.Seq.d/ 710 0.0 CFC757 (CFC757Q) /CSM/CF/CFC7-C/CFC757Q.Seq.d/ 710 0.0 SFJ894 (SFJ894Q) /CSM/SF/SFJ8-D/SFJ894Q.Seq.d/ 696 0.0 CFG306 (CFG306Q) /CSM/CF/CFG3-A/CFG306Q.Seq.d/ 692 0.0 CHD746 (CHD746Q) /CSM/CH/CHD7-B/CHD746Q.Seq.d/ 668 0.0 VFF209 (VFF209Q) /CSM/VF/VFF2-A/VFF209Q.Seq.d/ 555 e-157 CHB638 (CHB638Q) /CSM/CH/CHB6-B/CHB638Q.Seq.d/ 549 e-155 VFJ123 (VFJ123Q) /CSM/VF/VFJ1-A/VFJ123Q.Seq.d/ 533 e-150
own update	2002.11.19
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116920\|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 430 0.0 12 BE643088\|BE643088.1 Cri2_7_N07_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_7_N07 5', mRNA sequence. 48 2e-25 8 AB021846\|AB021846.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate PEF-128. 40 0.001 2 AB021831\|AB021831.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate BL6-19. 34 0.001 4 AB021830\|AB021830.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate NG-2. 34 0.001 4 AB021832\|AB021832.1 Plasmodium falciparum DNA for serine repeat antigen, partial cds, isolate BL6-35. 34 0.001 4 AF469923\|AF469923.1 Plasmodium falciparum isolate H-519 serine repeat antigen gene, partial cds. 32 0.001 5 AF469916\|AF469916.1 Plasmodium falciparum isolate L-201 serine repeat antigen gene, partial cds. 32 0.001 5 AF469919\|AF469919.1 Plasmodium falciparum isolate M-481 serine repeat antigen gene, partial cds. 32 0.001 5 AF469918\|AF469918.1 Plasmodium falciparum isolate M-170 serine repeat antigen gene, partial cds. 32 0.001 5
dna update	2003.11.27
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q75JC9) RecName: Full=Uncharacterized protein DDB_G0271670; Fla... 96 3e-18 (Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD... 35 9.8
protein update	2009. 5.16
PSORT	psg: 0.85 gvh: 0.66 alm: 0.44 top: 0.20 tms: 0.00 mit: 0.28 mip: 0.07 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: extracellular, including cell wall 24.0 %: cytoplasmic 12.0 %: vacuolar 12.0 %: nuclear 4.0 %: mitochondrial 4.0 %: vesicles of secretory system 4.0 %: endoplasmic reticulum >> prediction for CFI751 is exc
5' end seq. ID	CFI751F
5' end seq.	>CFI751F.Seq ATTTTACAACTATGCAAATAGAAAGATCATCTCAAAGAAACACAAATACAGAATCTCACA AACACACACAGAATAACGCAACTTTCCAGTGTTTTTAATAAATAAATAAATAATAAATAT ATATAAGTCAAAGAAAATGGACTCTAAATGGTTTTTTATTGTATTAATAAGTTTTTTATT GGTTCTTCCAAGTATAGTCACACCTTATAGAAAGAGTGTTGAAATAACAAATGAAGAACC ACAAAGAGATATATATCAATTAGAAAAAACTAATAAGATGGCAGAAGTAGGAGATTTGGG TGTTGCTTCATTTTTAAATATTTTAGATACCAGCAGTTCTAGTTCAAGCTCAAGCAGTTC TAGTTCAAGCAGTTCTAGTTCCAGCTCAAGCAGTTCTAGTTCAAGCAGCTCTTCATCAAG CAGTTCAAGTTCTTCTTCAAGCAGTTCAAGCTCTTCATCAAGCAGCTCAAGCTCTTCAAG CAGTTCATCATCATCATCATCATCATCATCATCATCATCATCATCAAGCAGCTCAAGCTC ATCATCATCAAGCAGCTCAAGCTCATCATCATCAAGCAGCTCAAGCTCAAGCTCATCATC AAGTAGCTCAAGCTCAAGCTCATCATCAAGCAGCTCAAGCTCATCAAGCAGCTCATCATC ATCATCATCAAGCAGCTCAAGTTCATCATCTTCAAGCTCTTCATCAAGCTCAAGTAGCTC AAGCTCTTCATCAAGCTCAAGCAGCTCAAGCTCTTCATCAAGTTCAAGTAGCTCATCTAG TTCAAGCTCTTCATCAAGCNNNNNNNNNN
Length of 5' end seq.	809
3' end seq. ID	CFI751Z
3' end seq.	>CFI751Z.Seq NNNNNNNNNNATNATCATCATCATCATCATCATCATCATCATCATCATCATNAAGNNNAT GATNATCATCATCATNAAGANGANGATGATCATCATCATNAAGANGAAGNNNANGATGAT CATCATGAAGANGAAGANGAAGNTNATNATCANGAAGCNGAAGNTNATNANGNAGCNNAT CATCATCATCATCATNNAGCNGAAGATGATNATCATCATGATNTTNNTCANGATNANGTA GANGANGNTGNTNATCANGATGAAGNAGCNGAAGNTGTTNATCANGNTGAAGTAGTTGAT NNNGTNGNNGNTGTTNNTCANGANGANGNTNCTNANGNNNAAGCAGTNGNTNANGNNNCT NANGNNGAAGCAGNNGNTNANGNAGTNGNTNANGNTNCTNNNGNNGNAGCAGTNGNTNAN GNTNCTCNNGCNNNAGCTGNTNNTCANGNNGANGNNGANGCNGNAGCNNCTCNTCANGNN NNAGCNNNTNATCANNNAGCNNNTCATCATCATCATCATCATCATCATCATCATCATCAT CATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAT CATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAT CATCATCATCATCATCATCAAGCTCAAGCAGCTCATCAAGTTCAAGCTCAAGCAGTTCTA GCTCAAGCAGTTCTAGTTCAAGGGAGAAAACTGAATTTAAAANATATAATATAATAATAA TAATAATAAAACTCGACCACCAAATTAAAAA
Length of 3' end seq.	811
Connected seq. ID	CFI751P
Connected seq.	>CFI751P.Seq ATTTTACAACTATGCAAATAGAAAGATCATCTCAAAGAAACACAAATACAGAATCTCACA AACACACACAGAATAACGCAACTTTCCAGTGTTTTTAATAAATAAATAAATAATAAATAT ATATAAGTCAAAGAAAATGGACTCTAAATGGTTTTTTATTGTATTAATAAGTTTTTTATT GGTTCTTCCAAGTATAGTCACACCTTATAGAAAGAGTGTTGAAATAACAAATGAAGAACC ACAAAGAGATATATATCAATTAGAAAAAACTAATAAGATGGCAGAAGTAGGAGATTTGGG TGTTGCTTCATTTTTAAATATTTTAGATACCAGCAGTTCTAGTTCAAGCTCAAGCAGTTC TAGTTCAAGCAGTTCTAGTTCCAGCTCAAGCAGTTCTAGTTCAAGCAGCTCTTCATCAAG CAGTTCAAGTTCTTCTTCAAGCAGTTCAAGCTCTTCATCAAGCAGCTCAAGCTCTTCAAG CAGTTCATCATCATCATCATCATCATCATCATCATCATCATCATCAAGCAGCTCAAGCTC ATCATCATCAAGCAGCTCAAGCTCATCATCATCAAGCAGCTCAAGCTCAAGCTCATCATC AAGTAGCTCAAGCTCAAGCTCATCATCAAGCAGCTCAAGCTCATCAAGCAGCTCATCATC ATCATCATCAAGCAGCTCAAGTTCATCATCTTCAAGCTCTTCATCAAGCTCAAGTAGCTC AAGCTCTTCATCAAGCTCAAGCAGCTCAAGCTCTTCATCAAGTTCAAGTAGCTCATCTAG TTCAAGCTCTTCATCAAGC----------ATNATCATCATCATCATCATCATCATCATCA TCATCATCATNAAGNNNATGATNATCATCATCATNAAGANGANGATGATCATCATCATNA AGANGAAGNNNANGATGATCATCATGAAGANGAAGANGAAGNTNATNATCANGAAGCNGA AGNTNATNANGNAGCNNATCATCATCATCATCATNNAGCNGAAGATGATNATCATCATGA TNTTNNTCANGATNANGTAGANGANGNTGNTNATCANGATGAAGNAGCNGAAGNTGTTNA TCANGNTGAAGTAGTTGATNNNGTNGNNGNTGTTNNTCANGANGANGNTNCTNANGNNNA AGCAGTNGNTNANGNNNCTNANGNNGAAGCAGNNGNTNANGNAGTNGNTNANGNTNCTNN NGNNGNAGCAGTNGNTNANGNTNCTCNNGCNNNAGCTGNTNNTCANGNNGANGNNGANGC NGNAGCNNCTCNTCANGNNNNAGCNNNTNATCANNNAGCNNNTCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCAAGCTCAAGCAGCTCATCAAGT TCAAGCTCAAGCAGTTCTAGCTCAAGCAGTTCTAGTTCAAGGGAGAAAACTGAATTTAAA ANATATAATATAATAATAATAATAATAAAACTCGACCACCAAATTAAAAA
Length of connected seq.	1600
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas