>CFI702 (CFI702Q) /CSM/CF/CFI7-A/CFI702Q.Seq.d/
XXXXXXXXXXGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAANNTCAAGCCATAAG
AAGAAAGAGTCAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGAACNAAT
GCAACGTGATATAGAGAGAAAAGNTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCAT
TTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGG
TCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGNCCAATACTTGNAAATGTTTT
ATTCTTTNAATGNGCAATGTGGATCCAATTGTTTATCACAGTAAAGGCAAAAGAACCCTC
AACA

---LQREERQRDQEXQAIRRKSQNDEYLELQREKEREXMQRDIERKXAAEESRKHKSTIF
QYIMRDGKLEREFSSASWGPYSKKEVEYYETXPILXNVLFFXXAMWIQLFITVKAKEPST

Frame A:
---nfkekkdkeikxxkp*eervkmmsilnckekkkenxcnvi*rekxqqkspeninqpf
snil*emvnwkensqvqvgvhiqrrrlnimklxqylxmfysxnxqcgsnclsq*rqknpq


Frame B:
---tskrrktkrsrxsshkkkesk**vs*iakrkrkrtnat*yrekxcsrrvqkt*inhf
piyyerw*igkrilkcklgsifkegg*il*n*xntxkcfilxmxnvdpivyhskgkrtln


Frame C:
---LQREERQRDQEXQAIRRKSQNDEYLELQREKEREXMQRDIERKXAAEESRKHKSTIF
QYIMRDGKLEREFSSASWGPYSKKEVEYYETXPILXNVLFFXXAMWIQLFITVKAKEPST

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI702 (CFI702Q) /CSM/CF/CFI7-A/CFI702Q.Seq.d/                        654   0.0
SSD171 (SSD171Q) /CSM/SS/SSD1-C/SSD171Q.Seq.d/                        599   e-170
SFK688 (SFK688Q) /CSM/SF/SFK6-D/SFK688Q.Seq.d/                        599   e-170
SFJ389 (SFJ389Q) /CSM/SF/SFJ3-D/SFJ389Q.Seq.d/                        599   e-170
SFJ341 (SFJ341Q) /CSM/SF/SFJ3-B/SFJ341Q.Seq.d/                        599   e-170
SFI438 (SFI438Q) /CSM/SF/SFI4-B/SFI438Q.Seq.d/                        599   e-170
SFH429 (SFH429Q) /CSM/SF/SFH4-B/SFH429Q.Seq.d/                        599   e-170
SFG847 (SFG847Q) /CSM/SF/SFG8-B/SFG847Q.Seq.d/                        599   e-170
SFG546 (SFG546Q) /CSM/SF/SFG5-B/SFG546Q.Seq.d/                        599   e-170
SFG187 (SFG187Q) /CSM/SF/SFG1-D/SFG187Q.Seq.d/                        599   e-170

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX545908|BX545908.2 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DASS-337F1.    34   0.006  5
AY065229|AY065229.1 Arabidopsis thaliana unknown protein (At5g25620) mRNA, complete cds.    34   0.007  4
AL445594|AL445594.3 Human chromosome 14 DNA sequence BAC R-74H1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human).    36   0.016  6
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    40   0.079  4
AC023203|AC023203.2 Homo sapiens chromosome 8 clone RP11-352L22 map 8, WORKING DRAFT SEQUENCE, 21 unordered pieces.    48   0.081  1
BU001455|BU001455.1 QGG27O05.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG27O05, mRNA sequence.    48   0.081  1
BQ866265|BQ866265.1 QGC7H23.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC7H23, mRNA sequence.    48   0.081  1
BU008337|BU008337.1 QGH7E18.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGH7E18, mRNA sequence.    48   0.081  1
AC025888|AC025888.8 Homo sapiens chromosome 18 clone RP11-479H18 map 18, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    48   0.081  1
BQ862631|BQ862631.1 QGC21K01.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC21K01, mRNA sequence.    48   0.081  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000770_2(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, c...    34   1.8
CP000500_224(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    33   3.0
AC137820_19(AC137820|pid:none) Medicago truncatula clone mth2-15...    33   3.0
AF070483_1(AF070483|pid:none) Coxiella burnetii dihydrolipoamide...    33   3.9
U07789_2(U07789|pid:none) Coxiella burnetii Nine Mile Ph I alpha...    33   3.9
CP000524_17(CP000524|pid:none) Bartonella bacilliformis KC583, c...    32   5.1
EU016628_34(EU016628|pid:none) Uncultured Group I marine crenarc...    32   5.1
S42875(S42875) dihydrolipoamide S-succinyltransferase (EC 2.3.1....    32   5.1
AE016828_1206(AE016828|pid:none) Coxiella burnetii RSA 493, comp...    32   5.1
CP001019_565(CP001019|pid:none) Coxiella burnetii CbuG_Q212, com...    32   5.1

 psg: 0.75  gvh: 0.09  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for CFI702 is nuc

>CFI702Z.Seq
NNNNNNNNNNGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAANNTCAAGCCATAAG
AAGAAAGAGTCAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGAACNAAT
GCAACGTGATATAGAGAGAAAAGNTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCAT
TTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGG
TCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGNCCAATACTTGNAAATGTTTT
ATTCTTTNAATGNGCAATGTGGATCCAATTGTTTATCACAGTAAAGGCAAAAGAACCCTC
AACA