>CFI693 (CFI693Q) /CSM/CF/CFI6-D/CFI693Q.Seq.d/
XXXXXXXXXXGTAGTCTTAGCATTGTTGATCGTAAGAAGAAATATCTTTAAATTATCTCA
AGGTGAATATGTTGCAGTTGAAAAGATTGAAACAATAGTTGTAAAGAGTGAATACGTTGA
ACAAGTTTGTATTTATGGTGATTCTCAAAAATCATGTGTAATTGCAATCATTCATCCACA
TCCAGAATCATGTAGTGAATGGGCTGGTTCAAAGAAAACTGATAAAGACATTAAAGANAT
TTGTAANAATCAAGATTTTATCAAAGTTGTATTGGATGATATAATTAAAAATTGCAAAAA
ATCTGGTCTTCATGGATTTGANATTCCAAAAGCAATTCATTTAACTCCANAAGCATTCTC

---VLALLIVRRNIFKLSQGEYVAVEKIETIVVKSEYVEQVCIYGDSQKSCVIAIIHPHP
ESCSEWAGSKKTDKDIKXICXNQDFIKVVLDDIIKNCKKSGLHGFXIPKAIHLTPXAF

Frame A:
---*s*hc*s*eeislnylkvnmlqlkrlkq*l*rvntlnkfvfmvilknhv*lqsfihi
qnhvvnglvqrkliktlkxfvxikilsklywmi*lkiaknlvfmdlxfqkqfi*lxkhs


Frame B:
---slsivdrkkkyl*iisr*iccs*kd*nnscke*ir*tslylw*fskimcncnhssts
rim**mgwfken**rh*rxl*xsrfyqscig*yn*klqkiwsswi*xsksnsfnsxsil


Frame C:
---VLALLIVRRNIFKLSQGEYVAVEKIETIVVKSEYVEQVCIYGDSQKSCVIAIIHPHP
ESCSEWAGSKKTDKDIKXICXNQDFIKVVLDDIIKNCKKSGLHGFXIPKAIHLTPXAF

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI693 (CFI693Q) /CSM/CF/CFI6-D/CFI693Q.Seq.d/                        670   0.0
VFM341 (VFM341Q) /CSM/VF/VFM3-B/VFM341Q.Seq.d/                        654   0.0
CFI593 (CFI593Q) /CSM/CF/CFI5-D/CFI593Q.Seq.d/                        654   0.0
VHG380 (VHG380Q) /CSM/VH/VHG3-D/VHG380Q.Seq.d/                        646   0.0
CFI815 (CFI815Q) /CSM/CF/CFI8-A/CFI815Q.Seq.d/                        646   0.0
CHG452 (CHG452Q) /CSM/CH/CHG4-C/CHG452Q.Seq.d/                        618   e-176
CHR758 (CHR758Q) /CSM/CH/CHR7-C/CHR758Q.Seq.d/                        615   e-175
CHG651 (CHG651Q) /CSM/CH/CHG6-C/CHG651Q.Seq.d/                        615   e-175
CFB729 (CFB729Q) /CSM/CF/CFB7-B/CFB729Q.Seq.d/                        603   e-172
AHB382 (AHB382Q) /CSM/AH/AHB3-D/AHB382Q.Seq.d/                        591   e-168

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ870927|BQ870927.1 QGI10G21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI10G21, mRNA sequence.    58   8e-05  1
BQ875501|BQ875501.1 QGI8E20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI8E20, mRNA sequence.    58   8e-05  1
AY196478|AY196478.1 Dictyostelium discoideum fatty acyl-CoA synthetase (fcsA) mRNA, complete cds.    56   9e-05  2
AC007504|AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence.    50   0.020  1
AY094420|AY094420.1 Arabidopsis thaliana At1g49430/F13F21_14 mRNA, complete cds.    50   0.020  1
BM159534|BM159534.1 EST562057 PyBS Plasmodium yoelii yoelii cDNA clone PYCJF35 5' end, mRNA sequence.    50   0.020  1
BF297852|BF297852.1 057PbA12 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    50   0.020  1
AY065424|AY065424.1 Arabidopsis thaliana putative acyl CoA synthetase (At1g49430) mRNA, complete cds.    50   0.020  1
BE240507|BE240507.1 EST404556 MHRP- Medicago truncatula cDNA clone pMHRP-45K18, mRNA sequence.    50   0.020  1
BF294187|BF294187.1 001PbC04 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    50   0.020  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK314452_1(AK314452|pid:none) Homo sapiens cDNA, FLJ95253, highl...    94   2e-18
AK122702_1(AK122702|pid:none) Homo sapiens cDNA FLJ16173 fis, cl...    94   2e-18
AB020644_1(AB020644|pid:none) Homo sapiens mRNA for KIAA0837 pro...    94   2e-18
DQ083031_1(DQ083031|pid:none) Homo sapiens acyl-CoA synthetase l...    94   2e-18
AB179065_1(AB179065|pid:none) Macaca fascicularis testis cDNA cl...    92   7e-18
AY052074_1(AY052074|pid:none) Drosophila melanogaster SD02971 fu...    91   2e-17
BC077120_1(BC077120|pid:none) Danio rerio zgc:101071, mRNA (cDNA...    90   3e-17
AL596127_3(AL596127|pid:none) Mouse DNA sequence from clone RP23...    89   6e-17
AL596127_4(AL596127|pid:none) Mouse DNA sequence from clone RP23...    89   6e-17
AK122384_1(AK122384|pid:none) Mus musculus mRNA for mKIAA0837 pr...    89   6e-17

 psg: 0.69  gvh: 0.40  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFI693 is mit

>CFI693Z.Seq
NNNNNNNNNNGTAGTCTTAGCATTGTTGATCGTAAGAAGAAATATCTTTAAATTATCTCA
AGGTGAATATGTTGCAGTTGAAAAGATTGAAACAATAGTTGTAAAGAGTGAATACGTTGA
ACAAGTTTGTATTTATGGTGATTCTCAAAAATCATGTGTAATTGCAATCATTCATCCACA
TCCAGAATCATGTAGTGAATGGGCTGGTTCAAAGAAAACTGATAAAGACATTAAAGANAT
TTGTAANAATCAAGATTTTATCAAAGTTGTATTGGATGATATAATTAAAAATTGCAAAAA
ATCTGGTCTTCATGGATTTGANATTCCAAAAGCAATTCATTTAACTCCANAAGCATTCTC