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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI686
Library CF
(Link to library)
Clone ID CFI686
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID CFI686P
(Link to Original site)
Representative DNA sequence 
>CFI686 (CFI686Q) /CSM/CF/CFI6-D/CFI686Q.Seq.d/
AATAATTTATTTGTTTCATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTA
TTTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAA
TTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAAXXXXX
XXXXXATAANATATGNANCNNNNNNAATNNNNAATGTTTAGTANAATNNTGTNAAATAGG
TTTTGGNTGTNNTGCAATTNCAAAAAATTGTAATNATAATGATCCATGNNNCNNTGATCA
NTGTGATNCAGNTATAGGTTGTTATTATGATAAGTTTGATAANTGTNATGCATGTAATNC
TGTAGATACTTGTATNNCAAATGATTTATGCTTNNCAAGGGAATGTAATNCAAGAGGGAA
NCCACCTTGTTTAATAAACCCTATTAATTGTNCAAGCANTGATCCATGCATTTTTTCATA
TTGTGAAAATGGTGTATGTATTNCAACATACATTTGTACTCCAACTCCATCTGTAACTCC
AACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCC
AACCGTTACCCCAACTCCAA
sequence update 2001.11.22
Translated Amino Acid sequence 
nnlfvsyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK--
-

---XIXXXXNXXCLVXXCXIGFGCXAIXKNCNXNDPXXXDXCDXXIGCYYDKFDXCXACN
XVDTCXXNDLCXXRECNXRGXPPCLINPINCXSXDPCIFSYCENGVCIXTYICTPTPSVT
PTVTPTVTPTVTPTVTPTVTPTVTPTP
Translated Amino Acid sequence (All Frames) 
Frame A:
nnlfvsyehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK--
-

---ixyxxxxxxnv*xnxvk*vlxvxqxqkivximihxxxixvxqx*vvimislixvmhv
xl*ilvxqmiyaxqgnvxqegxhlv**tllivqaxihaffhivkmvyvxqhtfvlqlhl*
lqllpqlllqllpqllhqpllqplpqlq

Frame B:
iiylfhmni**ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliikkk--
-

---*xmxxxxxxmfsxxxxnrfwxxcnxkkl*x**smxx*sx*xxyrlll**v**xxcm*
xcrylyxk*fmlxkgm*xkrextlfnkpy*lxkx*smhffil*kwcmyxnihlysnsicn
sncypncysncypncytnrysnrypns

Frame C:
*ficfi*tfnk*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---XIXXXXNXXCLVXXCXIGFGCXAIXKNCNXNDPXXXDXCDXXIGCYYDKFDXCXACN
XVDTCXXNDLCXXRECNXRGXPPCLINPINCXSXDPCIFSYCENGVCIXTYICTPTPSVT
PTVTPTVTPTVTPTVTPTVTPTVTPTP
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                        636   0.0
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/                        636   0.0
CHC630 (CHC630Q) /CSM/CH/CHC6-B/CHC630Q.Seq.d/                        636   0.0
CFI686 (CFI686Q) /CSM/CF/CFI6-D/CFI686Q.Seq.d/                        636   0.0
CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/                        636   0.0
CFC857 (CFC857Q) /CSM/CF/CFC8-C/CFC857Q.Seq.d/                        636   0.0
CFB308 (CFB308Q) /CSM/CF/CFB3-A/CFB308Q.Seq.d/                        636   0.0
CFB225 (CFB225Q) /CSM/CF/CFB2-B/CFB225Q.Seq.d/                        636   0.0
AFN818 (AFN818Q) /CSM/AF/AFN8-A/AFN818Q.Seq.d/                        636   0.0
AFN453 (AFN453Q) /CSM/AF/AFN4-C/AFN453Q.Seq.d/                        636   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CK261949|CK261949.1 EST708027 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABD21 5' end, mRNA sequence.    40   1e-05  3
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   3e-05  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-04  13
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    42   2e-04  10
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12 section 5 of 9 of the complete sequence.    34   2e-04  11
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   3e-04  16
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    36   3e-04  10
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         36   4e-04  13
CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence.    40   6e-04  2
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12 section 2 of 9 of the complete sequence.    46   7e-04  11
dna update 2004. 3. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                181   2e-44
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 65   2e-09
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 64   4e-09
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 52   2e-05
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 51   3e-05
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    50   4e-05
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 50   7e-05
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    46   0.001
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    46   0.001
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    45   0.002
protein update 2008.12.29
PSORT 

 psg: 0.52  gvh: 0.62  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFI686 is cyt
5' end seq. ID CFI686F
5' end seq. 
>CFI686F.Seq
AATAATTTATTTGTTTCATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTA
TTTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAA
TTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 185
3' end seq. ID CFI686Z
3' end seq. 
>CFI686Z.Seq
NNNNNNNNNNATAANATATGNANCNNNNNNAATNNNNAATGTTTAGTANAATNNTGTNAA
ATAGGTTTTGGNTGTNNTGCAATTNCAAAAAATTGTAATNATAATGATCCATGNNNCNNT
GATCANTGTGATNCAGNTATAGGTTGTTATTATGATAAGTTTGATAANTGTNATGCATGT
AATNCTGTAGATACTTGTATNNCAAATGATTTATGCTTNNCAAGGGAATGTAATNCAAGA
GGGAANCCACCTTGTTTAATAAACCCTATTAATTGTNCAAGCANTGATCCATGCATTTTT
TCATATTGTGAAAATGGTGTATGTATTNCAACATACATTTGTACTCCAACTCCATCTGTA
ACTCCAACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTT
ACTCCAACCGTTACCCCAACTCCAA
Length of 3' end seq. 445
Connected seq. ID CFI686P
Connected seq. 
>CFI686P.Seq
AATAATTTATTTGTTTCATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTA
TTTATATATTTATAGTAACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAA
TTGGAAAACATTATTAAAAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA-----
-----ATAANATATGNANCNNNNNNAATNNNNAATGTTTAGTANAATNNTGTNAAATAGG
TTTTGGNTGTNNTGCAATTNCAAAAAATTGTAATNATAATGATCCATGNNNCNNTGATCA
NTGTGATNCAGNTATAGGTTGTTATTATGATAAGTTTGATAANTGTNATGCATGTAATNC
TGTAGATACTTGTATNNCAAATGATTTATGCTTNNCAAGGGAATGTAATNCAAGAGGGAA
NCCACCTTGTTTAATAAACCCTATTAATTGTNCAAGCANTGATCCATGCATTTTTTCATA
TTGTGAAAATGGTGTATGTATTNCAACATACATTTGTACTCCAACTCCATCTGTAACTCC
AACTGTTACCCCAACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCC
AACCGTTACCCCAACTCCAA
Length of connected seq. 610
Full length Seq ID -
Full length Seq. -
Length of full length seq. -