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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI644
Library CF
(Link to library)
Clone ID CFI644
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFI644 (CFI644Q) /CSM/CF/CFI6-B/CFI644Q.Seq.d/
XXXXXXXXXXTCCAAATTTCCATANATGTGTTTAAAAACGTGGNGGNATNTTAAGNTGNG
AATTTNANCCCCCNANACAACCNANATCCCTTGATTGGGCTNNAAATNAAAATGATGATC
sequence update 2001.11.22
Translated Amino Acid sequence 
---pnfhxcv*KRGGXLXXEFXPPXQPXSLDWAXNXNDD
Translated Amino Acid sequence (All Frames) 
Frame A:
---pnfhxcv*KRGGXLXXEFXPPXQPXSLDWAXNXNDD


Frame B:
---qisixvfknvxxx*xxnxxpxxnxxpliglxxkmmi


Frame C:
---kfpxmclktwxxxkxxixxpxttxip*lgxkxk**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI644 (CFI644Q) /CSM/CF/CFI6-B/CFI644Q.Seq.d/                        129   9e-30
CFC489 (CFC489Q) /CSM/CF/CFC4-D/CFC489Q.Seq.d/                        123   6e-28
AFJ458 (AFJ458Q) /CSM/AF/AFJ4-C/AFJ458Q.Seq.d/                        121   2e-27
SFJ803 (SFJ803Q) /CSM/SF/SFJ8-A/SFJ803Q.Seq.d/                        117   4e-26
CFB693 (CFB693Q) /CSM/CF/CFB6-D/CFB693Q.Seq.d/                        117   4e-26
AFH808 (AFH808Q) /CSM/AF/AFH8-A/AFH808Q.Seq.d/                        117   4e-26
AFA159 (AFA159Q) /CSM/AF/AFA1-C/AFA159Q.Seq.d/                        117   4e-26
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/                        115   1e-25
AFL664 (AFL664Q) /CSM/AF/AFL6-C/AFL664Q.Seq.d/                        115   1e-25
AFM610 (AFM610Q) /CSM/AF/AFM6-A/AFM610Q.Seq.d/                        113   6e-25
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    98   3e-17  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    98   3e-17  1
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.    98   3e-17  1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    98   3e-17  1
dna update 2003.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    57   3e-07
protein update 2008.12.29
PSORT 

 psg: 0.74  gvh: 0.49  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for CFI644 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFI644Z
3' end seq. 
>CFI644Z.Seq
NNNNNNNNNNTCCAAATTTCCATANATGTGTTTAAAAACGTGGNGGNATNTTAAGNTGNG
AATTTNANCCCCCNANACAACCNANATCCCTTGATTGGGCTNNAAATNAAAATGATGATC
Length of 3' end seq. 120
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -