CFI560
Library CF
(Link to library)
Clone ID CFI560
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFI560P
(Link to Original site)
Representative DNA sequence
>CFI560 (CFI560Q) /CSM/CF/CFI5-C/CFI560Q.Seq.d/
AATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAAT
ACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTA
TCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGT
GATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTT
GGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCA
GCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAG
AATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGAT
CAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGT
GCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAA
GAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACAXXXXXXXXXXGTCGAAN
AAGNTAAANATTTNTNTGAAAANACCTTTGNTGCCNACCNANAANCCGAAAANAAAATGT
TTNNCGNCCNCGAANCCGCCNAAGCTNAANANANAAANAAAGCTGNCGAAAAATTAGCNG
CCGAAAAAGCTGCTGAAAAANAAGCCNAANAAGCTGATGAANAANAANAAGAAGNCNCTG
AANAAGATTTAGTTNAAACTGATGNCNAAAAANAAGAAGNCNAAAAATCNACCNAAAAAG
TT
sequence update 2001.11.22
Translated Amino Acid sequence
nfsnhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVS
DWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVK
NEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIKK
EINKVETDQLTHQY---

---VEXXKXXXEXTFXAXXXXEXKMFXXXEXAXAXXXXKAXEKLAAEKAAEKXAXXADEX
XXEXXEXDLVXTDXXKXEXXKSTXKV


Translated Amino Acid sequence (All Frames)
Frame A:
nfsnhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVS
DWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVK
NEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIKK
EINKVETDQLTHQY---

---VEXXKXXXEXTFXAXXXXEXKMFXXXEXAXAXXXXKAXEKLAAEKAAEKXAXXADEX
XXEXXEXDLVXTDXXKXEXXKSTXKV

Frame B:
ispiiifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitignqdgllv
igikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*r
mnkklivvvhtssyyhpn*inqhsmvnlniplclvqmfvvpqreftsfsttkerti*srk
kstklkpin*lint---

---sxkxxixxkxplxptxxpkxkcxxxxxppklxxxxklxkn*xpkkllkxkpxklmxx
xkkxlxki*xklmxkxkkxknxpkk

Frame C:
flqssyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgikmgc**
la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke
*tks*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrkepfnqer
nqqs*nrsinssi---

---rxx*xfx*kxlxcxpxxrkxnvxrprxrxsxxxkxsxrkisxrksc*kxsxxs**xx
xrxx*xrfsxn*xxkxrxxkixxks

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN642 (VFN642Q) /CSM/VF/VFN6-B/VFN642Q.Seq.d/ 930 0.0
VFM885 (VFM885Q) /CSM/VF/VFM8-D/VFM885Q.Seq.d/ 930 0.0
VFM435 (VFM435Q) /CSM/VF/VFM4-B/VFM435Q.Seq.d/ 930 0.0
VFM276 (VFM276Q) /CSM/VF/VFM2-D/VFM276Q.Seq.d/ 930 0.0
VFL360 (VFL360Q) /CSM/VF/VFL3-C/VFL360Q.Seq.d/ 930 0.0
VFL214 (VFL214Q) /CSM/VF/VFL2-A/VFL214Q.Seq.d/ 930 0.0
VFK631 (VFK631Q) /CSM/VF/VFK6-B/VFK631Q.Seq.d/ 930 0.0
VFK516 (VFK516Q) /CSM/VF/VFK5-A/VFK516Q.Seq.d/ 930 0.0
VFH220 (VFH220Q) /CSM/VF/VFH2-A/VFH220Q.Seq.d/ 930 0.0
VFH144 (VFH144Q) /CSM/VF/VFH1-B/VFH144Q.Seq.d/ 930 0.0

own update 2004. 8.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 930 0.0 3
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 7e-24 3
BZ392863|BZ392863.1 EINBW38TF EI_10_12_KB Entamoeba invadens genomic clone EINBW38, DNA sequence. 52 9e-07 2
BI876472|BI876472.1 fl72h01.y1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone 3819504 5' similar to TR:Q9PUC1 Q9PUC1 CALRETICULIN. ;, mRNA sequence. 42 6e-04 2
AY342298|AY342298.1 Ictalurus punctatus ER-resident chaperone calreticulin mRNA, complete cds. 56 8e-04 1
CB937139|CB937139.1 IpCGJx13_12_E07_23 IpCGJx13 Ictalurus punctatus cDNA clone IpCGJx13_12_E07 5', mRNA sequence. 56 8e-04 1
BI468042|BI468042.1 EST00452 Atlantic salmon Lambda Zap Express liver cDNA library Salmo salar cDNA clone LRR7-f02 5' similar to Calreticulin, mRNA sequence. 56 8e-04 1
CB086220|CB086220.1 hj81f04.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hj81f04, mRNA sequence. 36 8e-04 3
AL374953|AL374953.1 Medicago truncatula EST MtBB10D04F2 : T3 end of clone MtBB10D04 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic). 40 0.002 3
BQ261502|BQ261502.1 fz71d12.y1 Sugano SJD adult male Danio rerio cDNA clone 5914030 5' similar to TR:Q9PUC1 Q9PUC1 CALRETICULIN. ;, mRNA sequence. 40 0.002 2
dna update 2003.11.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 327 2e-88
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 205 1e-51
U27698_1(U27698|pid:none) Arabidopsis thaliana calreticulin (AtC... 204 2e-51
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 204 2e-51
U66344_1(U66344|pid:none) Arabidopsis thaliana calreticulin (Crt... 202 8e-51
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 202 8e-51
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 202 1e-50
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN... 202 1e-50
AY086745_1(AY086745|pid:none) Arabidopsis thaliana clone 27210 m... 201 2e-50
AC003114_8(AC003114|pid:none) Arabidopsis thaliana chromosome 1 ... 201 2e-50
protein update 2009. 5.15
PSORT

psg: 1.01 gvh: 0.69 alm: 0.49 top: 0.10 tms: 0.00 mit: 0.40 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: vacuolar
8.0 %: nuclear
8.0 %: endoplasmic reticulum

>> prediction for CFI560 is exc

5' end seq. ID CFI560F
5' end seq.
>CFI560F.Seq
AATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAAT
ACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTA
TCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGT
GATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTT
GGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCA
GCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAG
AATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGAT
CAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGT
GCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAA
GAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACANNNNNNNNNN
Length of 5' end seq. 593
3' end seq. ID CFI560Z
3' end seq.
>CFI560Z.Seq
NNNNNNNNNNGTCGAANAAGNTAAANATTTNTNTGAAAANACCTTTGNTGCCNACCNANA
ANCCGAAAANAAAATGTTTNNCGNCCNCGAANCCGCCNAAGCTNAANANANAAANAAAGC
TGNCGAAAAATTAGCNGCCGAAAAAGCTGCTGAAAAANAAGCCNAANAAGCTGATGAANA
ANAANAAGAAGNCNCTGAANAAGATTTAGTTNAAACTGATGNCNAAAAANAAGAAGNCNA
AAAATCNACCNAAAAAGTT
Length of 3' end seq. 259
Connected seq. ID CFI560P
Connected seq.
>CFI560P.Seq
AATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAAT
ACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTA
TCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGT
GATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTT
GGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCA
GCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAG
AATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGAT
CAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGT
GCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAA
GAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACA----------GTCGAAN
AAGNTAAANATTTNTNTGAAAANACCTTTGNTGCCNACCNANAANCCGAAAANAAAATGT
TTNNCGNCCNCGAANCCGCCNAAGCTNAANANANAAANAAAGCTGNCGAAAAATTAGCNG
CCGAAAAAGCTGCTGAAAAANAAGCCNAANAAGCTGATGAANAANAANAAGAAGNCNCTG
AANAAGATTTAGTTNAAACTGATGNCNAAAAANAAGAAGNCNAAAAATCNACCNAAAAAG
TT
Length of connected seq. 832
Full length Seq ID -
Full length Seq. -
Length of full length seq. -