CFI534
Library CF
(Link to library)
Clone ID CFI534
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16477-1
Original site URL
Representative seq. ID CFI534P
(Link to Original site)
Representative DNA sequence
>CFI534 (CFI534Q) /CSM/CF/CFI5-B/CFI534Q.Seq.d/
AGTCATTATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATA
TTAGGTTTATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTA
TTTTCTGGGCATTCTTCTGAACATACCAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAA
AAAAAAGAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGG
ATAACGACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAAT
CTATGAGTGAAGATGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTG
AAGTTGTATGTTTGCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATA
GAAGAGGTTCACGTAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATG
ATGAATTAAATAAACGTGATCGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTC
AAAACAACAACAACAACAATAATAATACCAACAACACTAACAACATTGAAATGGATGATA
AXXXXXXXXXXCTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGG
CTTTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACT
ATGTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGT
ACTTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAG
GTCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTC
AAACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATC
ATAACGTTCCAAACTCCTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAA
GTCCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTT
ACATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCT
TTAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTG
ATGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATGATC
CAATATNTTATAANCAGGTTTTAGG
sequence update 2001.11.22
Translated Amino Acid sequence
sl*ncelytklsnr*fspnirfid*pnntcsnn*lgi*fifwaff*TYQNELKVASKTSK
KRRDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMSEDEETPGMCCECTDQPAE
VVCLQCQDELCTVCSTSLHRRGSRRSHIFKNKHGQELDYDELNKRDRQPPLHGKEDEKVQ
NNNNNNNNTNNTNNIEMDD---

---LKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWY
FAEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDH
NVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFF
KHAFDGSGADNFFDAGSCIDGRLTSAWQWSAQIAKKPYDPIXYXQVL


Translated Amino Acid sequence (All Frames)
Frame A:
shykivnyiqnfqtdssalilgllinliilvaiinwvynlfsghssehtkts*rwrpklq
kkeeinlkkcqnkin*qkfwittlmi*i*kkmtqpivnlnl*vkmkklqvcavnvqinql
klyvcnvkmnfvqfvqlhsieevhvghiflkinmvknlimmn*invivnlhymakkmkkf
ktttttiiipttlttlkwmi---

---LKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWY
FAEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDH
NVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFF
KHAFDGSGADNFFDAGSCIDGRLTSAWQWSAQIAKKPYDPIXYXQVL

Frame B:
viikl*iiyktfkqivqp*y*vy*lt**yl*q*ligyiiyflgillnipkrvkggvqnfk
kkkrsi*rnvktk*inksfg*rp**yryrrr*lnqs*i*iye*r*rnsryvl*myrsts*
scmfamsr*tlyslfnftp*krft*vtyf*k*twsrt*l**ik*t*sstsitwqrr*kss
kqqqqq**yqqh*qh*ng**---

---srntlvqinqrevfhwlwnmalvvhvfltiivnnitmyinhspcgniffmiclnfgt
lqklifyadtdinyqtlvkv*ivfnnvqtlvklcivfyvklkkklvmiglvlplfiwvii
tfqtpwfssintlksles*vqsf*plnifqrspiqi*lltsktplvvhkl*pkssfvisl
ntlsmvvvpitfsmlalvlmvd*lllgngllksqrnlmiqyxixrf*

Frame C:
sl*ncelytklsnr*fspnirfid*pnntcsnn*lgi*fifwaff*TYQNELKVASKTSK
KRRDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMSEDEETPGMCCECTDQPAE
VVCLQCQDELCTVCSTSLHRRGSRRSHIFKNKHGQELDYDELNKRDRQPPLHGKEDEKVQ
NNNNNNNNTNNTNNIEMDD---

---qgil*sksirerffigfgtwhwwctsfsqss*ti*lcisitllvatyss*yv*tlvl
crn*sfmrtqisiikhwsrsksystmskrw*nya*ystsnskksw**lgwffrysfg*s*
rskllgfhr*ihsnl*npksnrfnh*iyskdhrskfsclhqkhlwwstnfnqnhpl*fl*
trfrw*wcr*lfrcwlly*w*infclamvcsnrketl*snxl*xgfr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFI534 (CFI534Q) /CSM/CF/CFI5-B/CFI534Q.Seq.d/ 1277 0.0
VHO745 (VHO745Q) /CSM/VH/VHO7-B/VHO745Q.Seq.d/ 1253 0.0
VHI553 (VHI553Q) /CSM/VH/VHI5-C/VHI553Q.Seq.d/ 1253 0.0
VHD241 (VHD241Q) /CSM/VH/VHD2-B/VHD241Q.Seq.d/ 1253 0.0
VHA539 (VHA539Q) /CSM/VH/VHA5-B/VHA539Q.Seq.d/ 1253 0.0
CHS293 (CHS293Q) /CSM/CH/CHS2-D/CHS293Q.Seq.d/ 1253 0.0
CHR668 (CHR668Q) /CSM/CH/CHR6-C/CHR668Q.Seq.d/ 1253 0.0
VHE160 (VHE160Q) /CSM/VH/VHE1-C/VHE160Q.Seq.d/ 1251 0.0
VHC810 (VHC810Q) /CSM/VH/VHC8-A/VHC810Q.Seq.d/ 1251 0.0
SFF581 (SFF581Q) /CSM/SF/SFF5-D/SFF581Q.Seq.d/ 1251 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL035475|AL035475.7 Plasmodium falciparum MAL4P2. 36 0.001 12
AC104914|AC104914.9 Mus musculus chromosome 9, clone RP23-108E20, complete sequence. 38 0.002 10
AC091873|AC091873.2 Homo sapiens chromosome 5 clone CTD-2577N22, complete sequence. 36 0.037 8
AC015760|AC015760.5 Homo sapiens clone RP11-1N2, WORKING DRAFT SEQUENCE, 30 unordered pieces. 36 0.060 9
AC109452|AC109452.2 Homo sapiens chromosome 5 clone RP11-198A9, WORKING DRAFT SEQUENCE, 7 ordered pieces. 36 0.063 10
AC134426|AC134426.3 Mus musculus clone RP24-342A12, WORKING DRAFT SEQUENCE, 9 unordered pieces. 50 0.075 1
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence. 32 0.078 14
AC145691|AC145691.2 Mus musculus chromosome 1 clone RP24-278B15 map 1, WORKING DRAFT SEQUENCE, 7 unordered pieces. 34 0.13 9
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 32 0.13 26
AC079310|AC079310.20 Homo sapiens 12 BAC RP11-850F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 38 0.14 6
dna update 2003.11.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001575_110(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 281 3e-74
CR382131_1131(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 256 1e-66
CR940353_528(CR940353|pid:none) Theileria annulata strain Ankara... 249 1e-64
CP001142_478(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 236 1e-60
AM910996_269(AM910996|pid:none) Plasmodium knowlesi strain H chr... 229 1e-58
AL844507_105(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 229 2e-58
CP000081_414(CP000081|pid:none) Leishmania major chromosome 35, ... 213 1e-53
CR380956_239(CR380956|pid:none) Candida glabrata strain CBS138 c... 211 3e-53
AM502253_428(AM502253|pid:none) Leishmania infantum chromosome 35. 211 4e-53
CR382125_995(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 210 7e-53
protein update 2009. 5.15
PSORT

psg: 0.20 gvh: 0.03 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.04
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.12 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal

>> prediction for CFI534 is nuc

5' end seq. ID CFI534F
5' end seq.
>CFI534F.Seq
AGTCATTATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATA
TTAGGTTTATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTA
TTTTCTGGGCATTCTTCTGAACATACCAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAA
AAAAAAGAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGG
ATAACGACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAAT
CTATGAGTGAAGATGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTG
AAGTTGTATGTTTGCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATA
GAAGAGGTTCACGTAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATG
ATGAATTAAATAAACGTGATCGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTC
AAAACAACAACAACAACAATAATAATACCAACAACACTAACAACATTGAAATGGATGATA
ANNNNNNNNNN
Length of 5' end seq. 611
3' end seq. ID CFI534Z
3' end seq.
>CFI534Z.Seq
NNNNNNNNNNCTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGC
TTTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTA
TGTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTA
CTTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGG
TCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCA
AACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCA
TAACGTTCCAAACTCCTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAG
TCCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTA
CATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTT
TAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGA
TGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATGATCC
AATATNTTATAANCAGGTTTTAGG
Length of 3' end seq. 684
Connected seq. ID CFI534P
Connected seq.
>CFI534P.Seq
AGTCATTATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATA
TTAGGTTTATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTA
TTTTCTGGGCATTCTTCTGAACATACCAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAA
AAAAAAGAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGG
ATAACGACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAAT
CTATGAGTGAAGATGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTG
AAGTTGTATGTTTGCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATA
GAAGAGGTTCACGTAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATG
ATGAATTAAATAAACGTGATCGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTC
AAAACAACAACAACAACAATAATAATACCAACAACACTAACAACATTGAAATGGATGATA
A----------CTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGG
CTTTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACT
ATGTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGT
ACTTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAG
GTCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTC
AAACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATC
ATAACGTTCCAAACTCCTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAA
GTCCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTT
ACATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCT
TTAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTG
ATGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATGATC
CAATATNTTATAANCAGGTTTTAGG
Length of connected seq. 1275
Full length Seq ID -
Full length Seq. -
Length of full length seq. -