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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI510
Library CF
(Link to library)
Clone ID CFI510
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16376-1
Original site URL
Representative seq. ID CFI510P
(Link to Original site)
Representative DNA sequence 
>CFI510 (CFI510Q) /CSM/CF/CFI5-A/CFI510Q.Seq.d/
ATATTATTTAAGAAATCATATTTATTAATTTTTTTTTTTTTTATNCATTNATNTTAAATT
NCATAAAAAGGGGGTTNAANAAAATATTATTTATTTNAATATTATCTTTATTATATNCAT
NGGTTTTATCTGAAGAANTTAAAAATAANGAAAANGANGCXXXXXXXXXXTTTNNNNTNN
NAATNNNNTTTNNNNTNANAATNNNAATNANAATNNNAATNANAATNANAATNNAAATNN
ANNTTNNCAAGATAGNCAAGNTNAACTTNAAGNNCANCTTCNAATGNAGAGAGATTATAG
GGAATNTCAACATANACGTGAAATGNAGGAAAAAGCACGTTTGNNTGCATTGGCACTTCA
NCAACAATTGGAAAANCANCANAATGAAGAAAATCAAGAGGAATTTGATGAACTTGTACC
AATTTTAAATGAGATTCCAGATATTCCAGTTCAAACACAACCACAACCATCTATTCCAGT
TGTTAAAACAAAACCACCTCAAACTGAACAACCACCTCAAACTAAAAAACCAACTCCTGC
TCCAACATTACCACCACCACAACCACCACAACCACAACAACCAAATACTCAATCACCACC
AGTTGTTCAAACAAATTCACCAAAATCTGAGAGTACTTTATCAGATTATGCAAGTTACTT
TGACCAATTCTTAAATATCGTTGATTTATTCACTCAAAAGTATAATCAACAACATCAACA
AGATAAAAAGGTTGAAAATAATAACCAAATTGATAATATTGAAATTNAAAATAATCTTTC
AAAAGTTTCACCAGCACTTTCAAAAAAAATAAAATTAAATAAATAAAAATTTTTAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
ii*EIIFINFFFFYXXXLNXIKRGXXKILFIXILSLLYXXVLSEEXKNXEXX---

---XXXNXXXXXNXNXNXNXNXNXNXXXQDXQXXLXXXLXMXRDYREXQHXREMXEKARL
XALALXQQLEXXXNEENQEEFDELVPILNEIPDIPVQTQPQPSIPVVKTKPPQTEQPPQT
KKPTPAPTLPPPQPPQPQQPNTQSPPVVQTNSPKSESTLSDYASYFDQFLNIVDLFTQKY
NQQHQQDKKVENNNQIDNIEIXNNLSKVSPALSKKIKLNK*kflk
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfkksylliffffxhxx*ix*kggxxkyylfxyylyyxhxfylkxlkixkxx---

---fxxxxxfxxxxxxxxxxxxxxxxxxxkixkxnxkxxfxxreiignxnixvkxrkkhv
xxhwhfxnnwkxxxmkkikrnlmnlyqf*mrfqifqfkhnhnhlfqllkqnhlklnnhlk
lknqlllqhyhhhnhhnhnnqilnhhqlfkqihqnlrvlyqimqvtltns*isliyslks
iinninkikrlkiitkliilkxkiifqkfhqhfqkk*n*inknf*

Frame B:
yylrnhiy*fffflxixxkxhkkgvxxniiyxniifiixxgfi*rx*k*xkxx---

---xxxxxxxxxxxxxxxxxxxxxkxxxxr*xxxtxxxxsnxerl*gxstxt*nxgkstf
xcigtsxtigkxxx*rksrgi**tctnfk*dsrysssnttttiyssc*nkttsn*tttsn
*ktnscsnitttttttttttkysittscsnkftki*eyfirlckll*pilkyr*fihskv
*sttstr*kg*k**pn**y*nxk*sfksftstfkknkik*ikifk

Frame C:
ii*EIIFINFFFFYXXXLNXIKRGXXKILFIXILSLLYXXVLSEEXKNXEXX---

---XXXNXXXXXNXNXNXNXNXNXNXXXQDXQXXLXXXLXMXRDYREXQHXREMXEKARL
XALALXQQLEXXXNEENQEEFDELVPILNEIPDIPVQTQPQPSIPVVKTKPPQTEQPPQT
KKPTPAPTLPPPQPPQPQQPNTQSPPVVQTNSPKSESTLSDYASYFDQFLNIVDLFTQKY
NQQHQQDKKVENNNQIDNIEIXNNLSKVSPALSKKIKLNK*kflk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI510 (CFI510Q) /CSM/CF/CFI5-A/CFI510Q.Seq.d/                        440   e-122
CHD242 (CHD242Q) /CSM/CH/CHD2-B/CHD242Q.Seq.d/                        432   e-120
CHB821 (CHB821Q) /CSM/CH/CHB8-A/CHB821Q.Seq.d/                        432   e-120
CHB715 (CHB715Q) /CSM/CH/CHB7-A/CHB715Q.Seq.d/                        432   e-120
CHB525 (CHB525Q) /CSM/CH/CHB5-B/CHB525Q.Seq.d/                        432   e-120
CHB324 (CHB324Q) /CSM/CH/CHB3-A/CHB324Q.Seq.d/                        432   e-120
CHA203 (CHA203Q) /CSM/CH/CHA2-A/CHA203Q.Seq.d/                        432   e-120
AFO637 (AFO637Q) /CSM/AF/AFO6-B/AFO637Q.Seq.d/                        432   e-120
CFH289 (CFH289Q) /CSM/CF/CFH2-D/CFH289Q.Seq.d/                        426   e-118
SHB755 (SHB755Q) /CSM/SH/SHB7-C/SHB755Q.Seq.d/                        414   e-115
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   432   0.0    9
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   0.002  8
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    32   0.009  10
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    34   0.012  9
AY160106|AY160106.1 Dictyostelium discoideum nucleotide exchange factor RasGEF R (gefR) gene, complete cds.    44   0.034  3
AP003186|AP003186.2 Clostridium perfringens DNA, complete genome, section 2/10.    36   0.079  9
AC125083|AC125083.2 Mus musculus chromosome UNK clone RP24-98I2, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48   0.19   1
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    34   0.19   6
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    38   0.22   9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   0.26   11
dna update 2003.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_69(AC116986|pid:none) Dictyostelium discoideum chromoso...   183   7e-45
protein update 2008.12.28
PSORT 

 psg: 0.75  gvh: 0.69  alm: 0.31  top: 0.20  tms: 0.07  mit: 0.26  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.20  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: plasma membrane

>> prediction for CFI510 is cyt
5' end seq. ID CFI510F
5' end seq. 
>CFI510F.Seq
ATATTATTTAAGAAATCATATTTATTAATTTTTTTTTTTTTTATNCATTNATNTTAAATT
NCATAAAAAGGGGGTTNAANAAAATATTATTTATTTNAATATTATCTTTATTATATNCAT
NGGTTTTATCTGAAGAANTTAAAAATAANGAAAANGANGCNNNNNNNNNN
Length of 5' end seq. 170
3' end seq. ID CFI510Z
3' end seq. 
>CFI510Z.Seq
NNNNNNNNNNTTTNNNNTNNNAATNNNNTTTNNNNTNANAATNNNAATNANAATNNNAAT
NANAATNANAATNNAAATNNANNTTNNCAAGATAGNCAAGNTNAACTTNAAGNNCANCTT
CNAATGNAGAGAGATTATAGGGAATNTCAACATANACGTGAAATGNAGGAAAAAGCACGT
TTGNNTGCATTGGCACTTCANCAACAATTGGAAAANCANCANAATGAAGAAAATCAAGAG
GAATTTGATGAACTTGTACCAATTTTAAATGAGATTCCAGATATTCCAGTTCAAACACAA
CCACAACCATCTATTCCAGTTGTTAAAACAAAACCACCTCAAACTGAACAACCACCTCAA
ACTAAAAAACCAACTCCTGCTCCAACATTACCACCACCACAACCACCACAACCACAACAA
CCAAATACTCAATCACCACCAGTTGTTCAAACAAATTCACCAAAATCTGAGAGTACTTTA
TCAGATTATGCAAGTTACTTTGACCAATTCTTAAATATCGTTGATTTATTCACTCAAAAG
TATAATCAACAACATCAACAAGATAAAAAGGTTGAAAATAATAACCAAATTGATAATATT
GAAATTNAAAATAATCTTTCAAAAGTTTCACCAGCACTTTCAAAAAAAATAAAATTAAAT
AAATAAAAATTTTTAAAA
Length of 3' end seq. 678
Connected seq. ID CFI510P
Connected seq. 
>CFI510P.Seq
ATATTATTTAAGAAATCATATTTATTAATTTTTTTTTTTTTTATNCATTNATNTTAAATT
NCATAAAAAGGGGGTTNAANAAAATATTATTTATTTNAATATTATCTTTATTATATNCAT
NGGTTTTATCTGAAGAANTTAAAAATAANGAAAANGANGC----------TTTNNNNTNN
NAATNNNNTTTNNNNTNANAATNNNAATNANAATNNNAATNANAATNANAATNNAAATNN
ANNTTNNCAAGATAGNCAAGNTNAACTTNAAGNNCANCTTCNAATGNAGAGAGATTATAG
GGAATNTCAACATANACGTGAAATGNAGGAAAAAGCACGTTTGNNTGCATTGGCACTTCA
NCAACAATTGGAAAANCANCANAATGAAGAAAATCAAGAGGAATTTGATGAACTTGTACC
AATTTTAAATGAGATTCCAGATATTCCAGTTCAAACACAACCACAACCATCTATTCCAGT
TGTTAAAACAAAACCACCTCAAACTGAACAACCACCTCAAACTAAAAAACCAACTCCTGC
TCCAACATTACCACCACCACAACCACCACAACCACAACAACCAAATACTCAATCACCACC
AGTTGTTCAAACAAATTCACCAAAATCTGAGAGTACTTTATCAGATTATGCAAGTTACTT
TGACCAATTCTTAAATATCGTTGATTTATTCACTCAAAAGTATAATCAACAACATCAACA
AGATAAAAAGGTTGAAAATAATAACCAAATTGATAATATTGAAATTNAAAATAATCTTTC
AAAAGTTTCACCAGCACTTTCAAAAAAAATAAAATTAAATAAATAAAAATTTTTAAAA
Length of connected seq. 828
Full length Seq ID -
Full length Seq. -
Length of full length seq. -