AFE836
Library AF
(Link to library)
Clone ID AFE836
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID AFE836Z
(Link to Original site)
Representative DNA sequence
>AFE836 (AFE836Q) /CSM/AF/AFE8-B/AFE836Q.Seq.d/
XXXXXXXXXXGGTCACACAAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAA
TCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACAT
GGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCC
AGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATT
CGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAA
TGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGA
ATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCC
AAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATC
TCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGT
TCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGG
TCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAA
TATATTAAAAATAATAAAAAAATAAAAAAA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---HTKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIEPSPDKMLQGRLFSYPD
THRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEF
AQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVR
AVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNL*inilkiikk*k


Translated Amino Acid sequence (All Frames)
Frame A:
---vtqktih*fklvvwf*iviqritllklnklpshhptwfqvlnhhqircykvvssliq
iliviv*v*tinksqsivhsp*rvvlkttnvmvswlsmvmvvkvqtinqtlsvvqshiqn
llninltslvsllvnhtiiqmttlfnqviyidsclkmpnlvssli*svtcpvspskkfkf
vpfqtftrltki*vlvyvrvlvlmlmmssnslldqtcksiy*k**knkk


Frame B:
---shkrlsinsnwsygfes*srellc*s*tsclltiphgsry*titr*dvtrsslllsr
yssssfrcklstnpsqlsirrkgwc*klpt*wfhgcqw*ww*rsklstklfrwsratsri
cst*i*rlwfrcsstiqssk*rlcstr*fi*thv*rcqisfrl*fsrshvrchhqrnsss
crfkllqg*qrfrcsfm*gswy*c**chqirc*iklvnqyiknnkkikk


Frame C:
---HTKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIEPSPDKMLQGRLFSYPD
THRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEF
AQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVR
AVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNL*inilkiikk*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFE836 (AFE836Q) /CSM/AF/AFE8-B/AFE836Q.Seq.d/ 1300 0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/ 1285 0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 1285 0.0
FC-AH16 (FC-AH16Q) /CSM/FC/FC-AH/FC-AH16Q.Seq.d/ 1285 0.0
CHD605 (CHD605Q) /CSM/CH/CHD6-A/CHD605Q.Seq.d/ 1285 0.0
FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/ 1285 0.0
CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/ 1285 0.0
AFN369 (AFN369Q) /CSM/AF/AFN3-C/AFN369Q.Seq.d/ 1285 0.0
AFM893 (AFM893Q) /CSM/AF/AFM8-D/AFM893Q.Seq.d/ 1285 0.0
AFM764 (AFM764Q) /CSM/AF/AFM7-C/AFM764Q.Seq.d/ 1285 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1283 0.0 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1283 0.0 1
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 9e-17 2
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 9e-17 2
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 82 9e-17 2
AR375090|AR375090.1 Sequence 96 from patent US 6605709. 76 1e-16 2
CD645756|CD645756.1 SSPG103 SS pectin Sclerotinia sclerotiorum cDNA similar to Peroxisomal catalase, mRNA sequence. 68 1e-12 2
BX564920|BX564920.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse74e09_q1c. 74 3e-09 1
BX554380|BX554380.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse15b01_q1c. 74 3e-09 1
BX554266|BX554266.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse14d06_q1c. 74 3e-09 1
dna update 2004. 5. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 437 e-121
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 244 2e-63
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 239 4e-62
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 239 5e-62
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 239 5e-62
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 234 2e-60
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 226 5e-58
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 224 2e-57
(Q9PWF7) RecName: Full=Catalase; EC=1.11.1.6; &AB03187... 213 3e-54
BC086479_1(BC086479|pid:none) Xenopus laevis hypothetical LOC495... 211 2e-53
protein update 2009. 4.19
PSORT

psg: 0.68 gvh: 0.45 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: mitochondrial
16.0 %: nuclear
8.0 %: cytoskeletal

>> prediction for AFE836 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFE836Z
3' end seq.
>AFE836Z.Seq
----------GGTCACACAAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAA
TCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACAT
GGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCC
AGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATT
CGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAA
TGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGA
ATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCC
AAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATC
TCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGT
TCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGG
TCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAA
TATATTAAAAATAATAAAAAAATAAAAAAA
Length of 3' end seq. 680
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -