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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI367
Library CF
(Link to library)
Clone ID CFI367
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15354-1
Original site URL
Representative seq. ID CFI367P
(Link to Original site)
Representative DNA sequence 
>CFI367 (CFI367Q) /CSM/CF/CFI3-C/CFI367Q.Seq.d/
GCATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAAT
TCACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGT
CCTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAATACACATAAAAAATTTATTA
AATAAAAATGACTACAACAACAACAAATGAAGTTTATATAGTTGATTGTATTCGTACACC
AATTGGTAGAGGATATAGTAATGGATCATTACATTCAATACAACCAATTGATTTATTATC
ATATACACTGGACCAATTAATGAAAAGAAATCCAAATGTTGATAGAGGATTAGTTGAAGA
TGTTATTTGTGGTGTTGTATCACCATTAAGAGAACAAGGTGCAAACATAGCAAGATTTGC
AGCATTAAAAGCCGGATTACCAATCAATGTGCCAGGTGTTCAATTAAATAGAATGTGTGG
ATCAGGTCAACAAGCTATCCATTTTGGCTCGCAAGCAATTAGATCAGGTGATATGGATAT
TGTTATTGGCTGTGGTGTAGAAATGATGAGTATAGTACCAATGGGCAGTGATTGGCAATT
AXXXXXXXXXXTAATTTCCAAAGTACTTCATCCAAGGTGTTTCCTCTGAAATGATTGCAG
AGAAATATAATTTACCAAGAGATGAAATCGATAAATTCTCTGGTAGATCTCACGAATTAG
CAGATAACGCAACAAAGAAAGGCTATTTCAAAGACCAAATCATCCCAGTCACCCTTCAAG
ATGGTAAAGTTGTTGATAAAGATGAAGGTATTCGTGTTCCAGTAGATTATAAGAAAATGT
CAACTTTAAAAACCCCATTCAAGCCAAATGGTAAGATTAGTGCTGCAAATGCTTCACAAA
TCAGCGATGGTGCTTCTGCTGTCCTATTGGTTAGTGGTCGTTTAGTTAAGAAATTAGGAT
TAAAACCACGTGCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATCCAGAATATATGC
TATTAGGTCCAATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTCTCACTAAAGATC
AAATTGATCTATATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAGGTTGGAAAAAGG
AATTAAATATTGATTTAGATAAAATTAATCCAAATGGTGGTGCAATCGCACATGGTCATC
CATTAGGTGCAACTGGTTGTATTCTTAGACTAAAATGGTAAATNAATTAGAAAGATCAAA
TAAAAAATACGCACTTCAAACAATGTGTATGGTTTGGTCAAGCAACGCAACAAT
sequence update 2001.11.22
Translated Amino Acid sequence 
hkr*iprllnr*rp*qtaiihlncsllg*lkc*thmmtsvlsd*vlylgesgqyt*kiy*
IKMTTTTTNEVYIVDCIRTPIGRGYSNGSLHSIQPIDLLSYTLDQLMKRNPNVDRGLVED
VICGVVSPLREQGANIARFAALKAGLPINVPGVQLNRMCGSGQQAIHFGSQAIRSGDMDI
VIGCGVEMMSIVPMGSDWQL---

---NFQSTSSKVFPLK*lqrniiyqemksinslvdltn*qitqqrkaisktkssqspfkm
vkllikmkvfvfq*iirkcql*kphssqmvrlvlqmlhksamvlllsywlvvv*lrn*d*
nhvlvl*lvq*laliqnicy*vqfqqllkhwkrvvslkikliymklmkplhl*f*vgkrn
*ili*ikliqmvvqshmvih*vqlvvfld*ngkxirkik*kirtsnnvyglvkqrnn
Translated Amino Acid sequence (All Frames) 
Frame A:
a*tvntstpksmktvancdnslelqptgivemlnahddigpfglgvilg*ewsihiknll
nkndynnnk*slys*lysytnw*ri**wiitfnttn*fiiiytgpinekkskc**ris*r
cylwccitikrtrckhskicsiksritnqcarcsik*nvwirstsypfwlasn*ir*ygy
cywlwcrndeystngq*lai---

---*fpkyfiqgvssemiaekynlprdeidkfsgrsheladnatkkgyfkdqiipvtlqd
gkvvdkdegirvpvdykkmstlktpfkpngkisaanasqisdgasavllvsgrlvkklgl
kprarivtctvvgsdpeymllgpipatikaleksgltkdqidlyeineafasvvlgwkke
lnidldkinpnggaiahghplgatgcilrlkw*xn*kdqiknthfkqcvwfgqatqq

Frame B:
hkr*iprllnr*rp*qtaiihlncsllg*lkc*thmmtsvlsd*vlylgesgqyt*kiy*
IKMTTTTTNEVYIVDCIRTPIGRGYSNGSLHSIQPIDLLSYTLDQLMKRNPNVDRGLVED
VICGVVSPLREQGANIARFAALKAGLPINVPGVQLNRMCGSGQQAIHFGSQAIRSGDMDI
VIGCGVEMMSIVPMGSDWQL---

---NFQSTSSKVFPLK*lqrniiyqemksinslvdltn*qitqqrkaisktkssqspfkm
vkllikmkvfvfq*iirkcql*kphssqmvrlvlqmlhksamvlllsywlvvv*lrn*d*
nhvlvl*lvq*laliqnicy*vqfqqllkhwkrvvslkikliymklmkplhl*f*vgkrn
*ili*ikliqmvvqshmvih*vqlvvfld*ngkxirkik*kirtsnnvyglvkqrnn

Frame C:
ingeylds*idedrsklr*ft*iaaywds*nvert**hrsfrircytwvrvvnthkkfik
*k*lqqqqmkfi*livfvhqlvedivmdhyiqynqliyyhihwtn**keiqmlied*lkm
lfvvlyhh*enkvqt*qdlqh*kpdyqsmcqvfn*iecvdqvnklsilarkqldqviwil
llavv*k**v*yqwavign---

---iskvlhprcfl*ndcrei*ftkr*nr*ilw*isrisr*rnkerlfqrpnhpshpsrw
*sc**r*ryscssrl*envnfknpiqakw*d*cckcftnqrwcfccpig*wsfs*eirik
ttcsycnlysswl*sriyairsnssny*sigkewsh*rsn*si*n**slcicsfrlekgi
ky*fr*n*skwwcnrtwssircnwlys*tkmvnxlersnkkyalqtmcmvwssnat
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI367 (CFI367Q) /CSM/CF/CFI3-C/CFI367Q.Seq.d/                       2539   0.0
SFD167 (SFD167Q) /CSM/SF/SFD1-C/SFD167Q.Seq.d/                       1298   0.0
SFH229 (SFH229Q) /CSM/SF/SFH2-B/SFH229Q.Seq.d/                       1291   0.0
AFL282 (AFL282Q) /CSM/AF/AFL2-D/AFL282Q.Seq.d/                       1273   0.0
VFG265 (VFG265Q) /CSM/VF/VFG2-C/VFG265Q.Seq.d/                       1265   0.0
VFO257 (VFO257Q) /CSM/VF/VFO2-C/VFO257Q.Seq.d/                       1168   0.0
AFN284 (AFN284Q) /CSM/AF/AFN2-D/AFN284Q.Seq.d/                       1150   0.0
VFN804 (VFN804Q) /CSM/VF/VFN8-A/VFN804Q.Seq.d/                       1070   0.0
CFA532 (CFA532Q) /CSM/CF/CFA5-B/CFA532Q.Seq.d/                       1070   0.0
VFL750 (VFL750Q) /CSM/VF/VFL7-C/VFL750Q.Seq.d/                        979   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BJ172173|BJ172173.1 Physcomitrella patens subsp. patens cDNA clone:pph31g22, 3' end, single read.   904   0.0    2
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.      313   3e-81  1
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.   313   3e-81  1
V00192|V00192.1 Dictyostelium discoideum 5.8S ribosomal RNA.      297   2e-76  1
AF219102|AF219102.1 Dictyostelium giganteum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   270   5e-68  1
AF219103|AF219103.1 Dictyostelium purpureum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   270   5e-68  1
AF219101|AF219101.1 Dictyostelium dimigraformum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   268   2e-67  1
AF219107|AF219107.1 Polysphondylium violaceum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   264   3e-66  1
AF351199|AF351199.1 Dictyostelium sphaerocephalum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   262   1e-65  1
AY330646|AY330646.1 Dictyostelium clavatum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   262   1e-65  1
dna update 2003.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000922_1494(CP000922|pid:none) Anoxybacillus flavithermus WK1,...   207   5e-87
BA000043_1320(BA000043|pid:none) Geobacillus kaustophilus HTA426...   200   2e-86
BA000043_2777(BA000043|pid:none) Geobacillus kaustophilus HTA426...   202   7e-84
CP000875_4368(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...   197   6e-81
BA000028_2672(BA000028|pid:none) Oceanobacillus iheyensis HTE831...   190   1e-80
AE017221_330(AE017221|pid:none) Thermus thermophilus HB27, compl...   197   5e-79
CP000820_3585(CP000820|pid:none) Frankia sp. EAN1pec, complete g...   197   2e-75
CP000656_1470(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...   186   4e-75
CP000854_1304(CP000854|pid:none) Mycobacterium marinum M, comple...   175   3e-74
CP000384_2303(CP000384|pid:none) Mycobacterium sp. MCS, complete...   174   3e-74
protein update 2009. 5.15
PSORT 

 psg: 0.66  gvh: 0.35  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFI367 is cyt
5' end seq. ID CFI367F
5' end seq. 
>CFI367F.Seq
GCATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAAT
TCACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGT
CCTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAATACACATAAAAAATTTATTA
AATAAAAATGACTACAACAACAACAAATGAAGTTTATATAGTTGATTGTATTCGTACACC
AATTGGTAGAGGATATAGTAATGGATCATTACATTCAATACAACCAATTGATTTATTATC
ATATACACTGGACCAATTAATGAAAAGAAATCCAAATGTTGATAGAGGATTAGTTGAAGA
TGTTATTTGTGGTGTTGTATCACCATTAAGAGAACAAGGTGCAAACATAGCAAGATTTGC
AGCATTAAAAGCCGGATTACCAATCAATGTGCCAGGTGTTCAATTAAATAGAATGTGTGG
ATCAGGTCAACAAGCTATCCATTTTGGCTCGCAAGCAATTAGATCAGGTGATATGGATAT
TGTTATTGGCTGTGGTGTAGAAATGATGAGTATAGTACCAATGGGCAGTGATTGGCAATT
ANNNNNNNNNN
Length of 5' end seq. 611
3' end seq. ID CFI367Z
3' end seq. 
>CFI367Z.Seq
NNNNNNNNNNTAATTTCCAAAGTACTTCATCCAAGGTGTTTCCTCTGAAATGATTGCAGA
GAAATATAATTTACCAAGAGATGAAATCGATAAATTCTCTGGTAGATCTCACGAATTAGC
AGATAACGCAACAAAGAAAGGCTATTTCAAAGACCAAATCATCCCAGTCACCCTTCAAGA
TGGTAAAGTTGTTGATAAAGATGAAGGTATTCGTGTTCCAGTAGATTATAAGAAAATGTC
AACTTTAAAAACCCCATTCAAGCCAAATGGTAAGATTAGTGCTGCAAATGCTTCACAAAT
CAGCGATGGTGCTTCTGCTGTCCTATTGGTTAGTGGTCGTTTAGTTAAGAAATTAGGATT
AAAACCACGTGCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATCCAGAATATATGCT
ATTAGGTCCAATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTCTCACTAAAGATCA
AATTGATCTATATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAGGTTGGAAAAAGGA
ATTAAATATTGATTTAGATAAAATTAATCCAAATGGTGGTGCAATCGCACATGGTCATCC
ATTAGGTGCAACTGGTTGTATTCTTAGACTAAAATGGTAAATNAATTAGAAAGATCAAAT
AAAAAATACGCACTTCAAACAATGTGTATGGTTTGGTCAAGCAACGCAACAAT
Length of 3' end seq. 713
Connected seq. ID CFI367P
Connected seq. 
>CFI367P.Seq
GCATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAAT
TCACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGT
CCTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCAATACACATAAAAAATTTATTA
AATAAAAATGACTACAACAACAACAAATGAAGTTTATATAGTTGATTGTATTCGTACACC
AATTGGTAGAGGATATAGTAATGGATCATTACATTCAATACAACCAATTGATTTATTATC
ATATACACTGGACCAATTAATGAAAAGAAATCCAAATGTTGATAGAGGATTAGTTGAAGA
TGTTATTTGTGGTGTTGTATCACCATTAAGAGAACAAGGTGCAAACATAGCAAGATTTGC
AGCATTAAAAGCCGGATTACCAATCAATGTGCCAGGTGTTCAATTAAATAGAATGTGTGG
ATCAGGTCAACAAGCTATCCATTTTGGCTCGCAAGCAATTAGATCAGGTGATATGGATAT
TGTTATTGGCTGTGGTGTAGAAATGATGAGTATAGTACCAATGGGCAGTGATTGGCAATT
A----------TAATTTCCAAAGTACTTCATCCAAGGTGTTTCCTCTGAAATGATTGCAG
AGAAATATAATTTACCAAGAGATGAAATCGATAAATTCTCTGGTAGATCTCACGAATTAG
CAGATAACGCAACAAAGAAAGGCTATTTCAAAGACCAAATCATCCCAGTCACCCTTCAAG
ATGGTAAAGTTGTTGATAAAGATGAAGGTATTCGTGTTCCAGTAGATTATAAGAAAATGT
CAACTTTAAAAACCCCATTCAAGCCAAATGGTAAGATTAGTGCTGCAAATGCTTCACAAA
TCAGCGATGGTGCTTCTGCTGTCCTATTGGTTAGTGGTCGTTTAGTTAAGAAATTAGGAT
TAAAACCACGTGCTCGTATTGTAACTTGTACAGTAGTTGGCTCTGATCCAGAATATATGC
TATTAGGTCCAATTCCAGCAACTATTAAAGCATTGGAAAAGAGTGGTCTCACTAAAGATC
AAATTGATCTATATGAAATTAATGAAGCCTTTGCATCTGTAGTTTTAGGTTGGAAAAAGG
AATTAAATATTGATTTAGATAAAATTAATCCAAATGGTGGTGCAATCGCACATGGTCATC
CATTAGGTGCAACTGGTTGTATTCTTAGACTAAAATGGTAAATNAATTAGAAAGATCAAA
TAAAAAATACGCACTTCAAACAATGTGTATGGTTTGGTCAAGCAACGCAACAAT
Length of connected seq. 1304
Full length Seq ID -
Full length Seq. -
Length of full length seq. -