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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI288
Library CF
(Link to library)
Clone ID CFI288
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFI288 (CFI288Q) /CSM/CF/CFI2-D/CFI288Q.Seq.d/
TTGGCCTACTGGAAATATTTTTTTTAAAATGAAAAAAATAATATTATTTTTAACAGTGCT
ACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTATGAAATGTGTGGATTGGGA
TTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATAGATTTTATGAACATCANGG
CGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCATACCCAACTGAATTGGGTCA
ATNATGTGGCCCAGCACAAAGANGAAGXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence 
WPTGNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYRFYEHXG
DGFLFQRGKFTKPYPTELGQXCGPAQRX---
Translated Amino Acid sequence (All Frames) 
Frame A:
laywkyff*neknniifnsatciiiw*n*itfiyemcglgfwfkfmcsipkkl*il*tsx
rwflipkr*ihktipn*igsxmwpstkx---


Frame B:
WPTGNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYRFYEHXG
DGFLFQRGKFTKPYPTELGQXCGPAQRX---


Frame C:
glleifflk*kk*yyf*qcylyyylvklnhihl*nvwigilvqihvqhtqetidfmnixa
mvsyskevnsqnhtqlnwvnxvaqhkxe---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI288 (CFI288Q) /CSM/CF/CFI2-D/CFI288Q.Seq.d/                        436   e-122
SFK281 (SFK281Q) /CSM/SF/SFK2-D/SFK281Q.Seq.d/                        420   e-117
SFJ310 (SFJ310Q) /CSM/SF/SFJ3-A/SFJ310Q.Seq.d/                        420   e-117
SFI679 (SFI679Q) /CSM/SF/SFI6-D/SFI679Q.Seq.d/                        420   e-117
SFI438 (SFI438Q) /CSM/SF/SFI4-B/SFI438Q.Seq.d/                        420   e-117
SFH838 (SFH838Q) /CSM/SF/SFH8-B/SFH838Q.Seq.d/                        420   e-117
SFH592 (SFH592Q) /CSM/SF/SFH5-D/SFH592Q.Seq.d/                        420   e-117
SFH429 (SFH429Q) /CSM/SF/SFH4-B/SFH429Q.Seq.d/                        420   e-117
SFG847 (SFG847Q) /CSM/SF/SFG8-B/SFG847Q.Seq.d/                        420   e-117
SFG546 (SFG546Q) /CSM/SF/SFG5-B/SFG546Q.Seq.d/                        420   e-117
own update 2002.11.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC008247|AC008247.3 Homo sapiens chromosome 2 clone RP11-333A4 map 2, WORKING DRAFT SEQUENCE, 66 unordered pieces.    36   0.16   6
AC016771|AC016771.5 Homo sapiens chromosome 15 clone RP11-565O12, WORKING DRAFT SEQUENCE, 19 unordered pieces.    40   0.57   6
CE252212|CE252212.1 tigr-gss-dog-17000335924083 Dog Library Canis familiaris genomic, genomic survey sequence.    36   0.62   2
CG157087|CG157087.1 PUFWD85TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0746P02, genomic survey sequence.    36   0.83   2
AC121571|AC121571.4 Mus musculus chromosome 3 clone RP23-231J6, complete sequence.    44   0.96   1
CG157088|CG157088.1 PUFWD85TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0746P02, genomic survey sequence.    36   0.98   2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32   1.5    7
BX679663|BX679663.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    32   2.0    6
AL929030|AL929030.7 Zebrafish DNA sequence from clone CH211-69M14 in linkage group 20.    40   2.4    3
CD030222|CD030222.1 mgmt001xN19f.b Mated culture Magnaporthe grisea cDNA clone mgmt001xN19 5', mRNA sequence.    32   2.5    2
dna update 2003.12.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 438,559,765
protein update 2009. 5.15
PSORT 

 psg: 0.86  gvh: 0.72  alm: 0.58  top: 0.23  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for CFI288 is exc
5' end seq. ID CFI288F
5' end seq. 
>CFI288F.Seq
TTGGCCTACTGGAAATATTTTTTTTAAAATGAAAAAAATAATATTATTTTTAACAGTGCT
ACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTATGAAATGTGTGGATTGGGA
TTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATAGATTTTATGAACATCANGG
CGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCATACCCAACTGAATTGGGTCA
ATNATGTGGCCCAGCACAAAGANGAAGNNNNNNNNNN
Length of 5' end seq. 277
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -