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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI278
Library CF
(Link to library)
Clone ID CFI278
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1
Original site URL
Representative seq. ID CFI278P
(Link to Original site)
Representative DNA sequence 
>CFI278 (CFI278Q) /CSM/CF/CFI2-D/CFI278Q.Seq.d/
TAACAATTATTAAAAACAAAAAGATATTTTGTTTTTTCTTGTTTTCTTTATTCACATTAC
TATTTCAATTTAATTTTTTACAACCATCGTCATCAATAAAATCAAAATTGGAATTTAAAT
CACCAATTGAAATTAAGATGATGAAGCCAGATTTAAATAGTCCATTACCACAATCACCAC
AACTTCAATCATTTGGAAGTAGATCATCAGATCTTGCAACCGAGGATTTATTTTTGAAGA
AATTGGAAGCAATCTCACAAACTGCACCAAATGAAACAGTAAAGAATGAATTTTTAAACA
AAGAAATACCATCTATCAACAAATTGTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAA
TCGATTGGGATAAAATCAATCCACCACCAGCTGATATGGTTTTAAACTATAAAGATTTAC
CAGCAATCACTGAACAAAGAACTTCAGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAA
ATGGAGGTTTAGGTACAACAATGGGTTGTACTGGTCCAAXXXXXXXXXXAAGAATTTNAA
TCAATAAANAAATTNAAAATTTTTAANACCAANAACATTTGGGNCAATNTCAAANCAATG
GATNGNATTTTNAAACAAAATNTTTTGGATGATATGGANATCATTATCNATCCNAAGGNT
GCTGATGGTAAAAANATCATTCAATTGGANATTGCTGCTGGNGCTGCAATTGAATTNTTT
AACAANGCAAAAGGNGNCAATGNACCAANATCAANATTTTTNCCAGTGAAATCAACCTNT
GATNTNTTTATCGNTCAANCAAATNTNTACTCNCNCNANAANGGTGTTTTGGNAATGAAC
AANAA
sequence update 2001.11.22
Translated Amino Acid sequence 
TIIKNKKIFCFFLFSLFTLLFQFNFLQPSSSIKSKLEFKSPIEIKMMKPDLNSPLPQSPQ
LQSFGSRSSDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKKVI
DWDKINPPPADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGP---

---EFXSIXKXKIFXTXNIWXNXKXMDXIXKQNXLDDMXIIIXPKXADGKXIIQLXIAAG
AAIEXFNXAKGXNXPXSXFXPVKSTXDXFIXQXNXYSXXXGVLXMNX
Translated Amino Acid sequence (All Frames) 
Frame A:
*qllktkryfvfscflyshyyfnlifynhrhq*nqnwnlnhqlklr**sqi*ivhyhnhh
nfnhlevdhqilqpriyf*rnwkqshklhqmkq*rmnf*tkkyhlstnclpvs*rierk*
sigiksihhqliwf*tikiyqqslnkelqnslqnwlf*n*mev*vqqwvvlvq---

---knxnq*xnxkflxpxtfgxxsxqwxxfxnkxfwmiwxslsixrxlmvkxsfnwxlll
xlqlnxltxqkxxmxqxqxfxq*nqpxxxlsxxqxxtxxxxvfwx*tx

Frame B:
nny*kqkdilfflvffihitisi*ffttivinkikigi*itn*n*ddearfk*sittitt
tsiiwk*iirscnrgfifeeigsnltnctk*nske*ifkqrntiyqqivypflke*kesn
rlg*nqstts*ygfkl*rftsnh*tknfrtrfkigcfeikwrfrynnglyws---

---rixinkxixnf*xqxhlgqxqxngxxfxtkxfg*ygxhyxsxgc*w*kxhsigxccw
xcn*ix*qxkrxqxtxixifxseinl*xxyrsxkxxlxxxxcfgneqx

Frame C:
TIIKNKKIFCFFLFSLFTLLFQFNFLQPSSSIKSKLEFKSPIEIKMMKPDLNSPLPQSPQ
LQSFGSRSSDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKLFTRFLKNRKKVI
DWDKINPPPADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMGCTGP---

---EFXSIXKXKIFXTXNIWXNXKXMDXIXKQNXLDDMXIIIXPKXADGKXIIQLXIAAG
AAIEXFNXAKGXNXPXSXFXPVKSTXDXFIXQXNXYSXXXGVLXMNX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI278 (CFI278Q) /CSM/CF/CFI2-D/CFI278Q.Seq.d/                       1239   0.0
VFJ586 (VFJ586Q) /CSM/VF/VFJ5-D/VFJ586Q.Seq.d/                        932   0.0
VFA701 (VFA701Q) /CSM/VF/VFA7-A/VFA701Q.Seq.d/                        932   0.0
SFC341 (SFC341Q) /CSM/SF/SFC3-B/SFC341Q.Seq.d/                        932   0.0
CHD685 (CHD685Q) /CSM/CH/CHD6-D/CHD685Q.Seq.d/                        932   0.0
CHA209 (CHA209Q) /CSM/CH/CHA2-A/CHA209Q.Seq.d/                        932   0.0
CFK491 (CFK491Q) /CSM/CF/CFK4-D/CFK491Q.Seq.d/                        932   0.0
CFE266 (CFE266Q) /CSM/CF/CFE2-C/CFE266Q.Seq.d/                        932   0.0
CFD837 (CFD837Q) /CSM/CF/CFD8-B/CFD837Q.Seq.d/                        932   0.0
CFD486 (CFD486Q) /CSM/CF/CFD4-D/CFD486Q.Seq.d/                        932   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.   773   0.0    3
L28007|L28007.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase (UDPGP2) gene, partial cds.   141   2e-29  1
BQ060478|BQ060478.1 Bvstrg3ARGF7 Sugar Beet germination cDNA library Beta vulgaris cDNA 5' similar to UDP-glucose pyrophosphorylase, mRNA sequence.    60   5e-05  1
AX489345|AX489345.1 Sequence 6645 from Patent WO02053728.          52   9e-05  2
CB348865|CB348865.1 CAB2SG0005_IVbF_D11 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0005_IVbF_D11 5', mRNA sequence.    52   0.013  1
CB971834|CB971834.1 CAB10006_IIIa_Fa_E02 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10006_IIIa_Fa_E02 5', mRNA sequence.    52   0.013  1
BQ489736|BQ489736.1 69-E9234-006-008-J18-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone J-18-8, mRNA sequence.    52   0.013  1
BQ490192|BQ490192.1 49-E9435-006-010-A14-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone A-14-10, mRNA sequence.    52   0.013  1
CB982722|CB982722.1 CAB70007_IIIb_Fb_H09 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70007_IIIb_Fb_H09 5', mRNA sequence.    52   0.013  1
CB981893|CB981893.1 CAB70005_IVaF_D05 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70005_IVaF_D05 5', mRNA sequence.    52   0.013  1
dna update 2003.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   254   2e-66
AY850189_1(AY850189|pid:none) Emericella nidulans UDP-glucose py...    79   2e-13
AL590443_27(AL590443|pid:none) chromosome III of strain GB-M1 of...    78   4e-13
CR382127_82(CR382127|pid:none) Yarrowia lipolytica strain CLIB12...    77   5e-13
CS000704_1(CS000704|pid:none) Sequence 9 from Patent WO2005005629.     77   5e-13
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...    77   9e-13
BC060013_1(BC060013|pid:none) Xenopus laevis hypothetical protei...    76   2e-12
AE017343_372(AE017343|pid:none) Cryptococcus neoformans var. neo...    76   2e-12
AM920436_1279(AM920436|pid:none) Penicillium chrysogenum Wiscons...    74   8e-12
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...    74   8e-12
protein update 2009. 5.15
PSORT 

 psg: 1.00  gvh: 0.65  alm: 0.42  top: 0.40  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for CFI278 is exc
5' end seq. ID CFI278F
5' end seq. 
>CFI278F.Seq
TAACAATTATTAAAAACAAAAAGATATTTTGTTTTTTCTTGTTTTCTTTATTCACATTAC
TATTTCAATTTAATTTTTTACAACCATCGTCATCAATAAAATCAAAATTGGAATTTAAAT
CACCAATTGAAATTAAGATGATGAAGCCAGATTTAAATAGTCCATTACCACAATCACCAC
AACTTCAATCATTTGGAAGTAGATCATCAGATCTTGCAACCGAGGATTTATTTTTGAAGA
AATTGGAAGCAATCTCACAAACTGCACCAAATGAAACAGTAAAGAATGAATTTTTAAACA
AAGAAATACCATCTATCAACAAATTGTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAA
TCGATTGGGATAAAATCAATCCACCACCAGCTGATATGGTTTTAAACTATAAAGATTTAC
CAGCAATCACTGAACAAAGAACTTCAGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAA
ATGGAGGTTTAGGTACAACAATGGGTTGTACTGGTCCAANNNNNNNNNN
Length of 5' end seq. 529
3' end seq. ID CFI278Z
3' end seq. 
>CFI278Z.Seq
NNNNNNNNNNAAGAATTTNAATCAATAAANAAATTNAAAATTTTTAANACCAANAACATT
TGGGNCAATNTCAAANCAATGGATNGNATTTTNAAACAAAATNTTTTGGATGATATGGAN
ATCATTATCNATCCNAAGGNTGCTGATGGTAAAAANATCATTCAATTGGANATTGCTGCT
GGNGCTGCAATTGAATTNTTTAACAANGCAAAAGGNGNCAATGNACCAANATCAANATTT
TTNCCAGTGAAATCAACCTNTGATNTNTTTATCGNTCAANCAAATNTNTACTCNCNCNAN
AANGGTGTTTTGGNAATGAACAANAA
Length of 3' end seq. 326
Connected seq. ID CFI278P
Connected seq. 
>CFI278P.Seq
TAACAATTATTAAAAACAAAAAGATATTTTGTTTTTTCTTGTTTTCTTTATTCACATTAC
TATTTCAATTTAATTTTTTACAACCATCGTCATCAATAAAATCAAAATTGGAATTTAAAT
CACCAATTGAAATTAAGATGATGAAGCCAGATTTAAATAGTCCATTACCACAATCACCAC
AACTTCAATCATTTGGAAGTAGATCATCAGATCTTGCAACCGAGGATTTATTTTTGAAGA
AATTGGAAGCAATCTCACAAACTGCACCAAATGAAACAGTAAAGAATGAATTTTTAAACA
AAGAAATACCATCTATCAACAAATTGTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAA
TCGATTGGGATAAAATCAATCCACCACCAGCTGATATGGTTTTAAACTATAAAGATTTAC
CAGCAATCACTGAACAAAGAACTTCAGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAA
ATGGAGGTTTAGGTACAACAATGGGTTGTACTGGTCCAA----------AAGAATTTNAA
TCAATAAANAAATTNAAAATTTTTAANACCAANAACATTTGGGNCAATNTCAAANCAATG
GATNGNATTTTNAAACAAAATNTTTTGGATGATATGGANATCATTATCNATCCNAAGGNT
GCTGATGGTAAAAANATCATTCAATTGGANATTGCTGCTGGNGCTGCAATTGAATTNTTT
AACAANGCAAAAGGNGNCAATGNACCAANATCAANATTTTTNCCAGTGAAATCAACCTNT
GATNTNTTTATCGNTCAANCAAATNTNTACTCNCNCNANAANGGTGTTTTGGNAATGAAC
AANAA
Length of connected seq. 835
Full length Seq ID -
Full length Seq. -
Length of full length seq. -