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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI277
Library CF
(Link to library)
Clone ID CFI277
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U08241-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFI277 (CFI277Q) /CSM/CF/CFI2-D/CFI277Q.Seq.d/
XXXXXXXXXXTNNNNNNNNNNNNNNNNNNNNNNATNTNNANNNATNNNNCAATANNNNNN
NNNGNNNAANNAAAGGNNNTANCNNNGNAANAAAAANTTANANAGNCAAATNATATNTTN
GANTTCANCAGNNCAAACANTGATGCAATAANAAAAATAGAATTNCCACTTTCAATCCCT
TCAAATCAATGGTTCTTCTCCTNTCCAATAAAACATATCATGAGTTTCAGCCCAACNTAT
GGTACACCATCGAAAATTATCGATTCACCAAGTAAATTGTTAAACACACCAAAAAAGAAA
CAACAAGACAAAACAAACAAGACCAACAAAACACCAGTCAAACCAAAATTGGGTGAATAT
GGACAAAAAAGCATAAAAACAAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
---XXXXXXXXXXXXXIXXXXXXKXXXXXXKXXXXNXXXXFXXXNXDAIXKIEXPLSIPS
NQWFFSXPIKHIMSFSPTYGTPSKIIDSPSKLLNTPKKKQQDKTNKTNKTPVKPKLGEYG
QKSIKTK
Translated Amino Acid sequence (All Frames) 
Frame A:
---xxxxxxxxxxxxxnxxxxxxkgxxxxxkxxxxkxyxxxxqxkx*cnxknrixtfnpf
ksmvlllsnktyhefqpnxwytienyrftk*ivkhtkkettrqnkqdqqntsqtkig*iw
tkkhknk


Frame B:
---XXXXXXXXXXXXXIXXXXXXKXXXXXXKXXXXNXXXXFXXXNXDAIXKIEXPLSIPS
NQWFFSXPIKHIMSFSPTYGTPSKIIDSPSKLLNTPKKKQQDKTNKTNKTPVKPKLGEYG
QKSIKTK


Frame C:
---xxxxxxxxxxxxqxxxxxxxrxxxxxkxlxxqxixxxsxxqtxmq*xk*nxhfqslq
ingsspxq*nis*vsaqxmvhhrklsihqvnc*thqkrnnktkqtrptkhqsnqnwvnmd
kka*kqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD158 (SLD158Q) /CSM/SL/SLD1-C/SLD158Q.Seq.d/                        281   4e-75
SLB450 (SLB450Q) /CSM/SL/SLB4-C/SLB450Q.Seq.d/                        281   4e-75
SFF281 (SFF281Q) /CSM/SF/SFF2-D/SFF281Q.Seq.d/                        281   4e-75
CFI277 (CFI277Q) /CSM/CF/CFI2-D/CFI277Q.Seq.d/                        281   4e-75
AFO683 (AFO683Q) /CSM/AF/AFO6-D/AFO683Q.Seq.d/                        276   2e-73
AFI258 (AFI258Q) /CSM/AF/AFI2-C/AFI258Q.Seq.d/                        266   2e-70
AFB586 (AFB586Q) /CSM/AF/AFB5-D/AFB586Q.Seq.d/                        212   3e-54
AFH642 (AFH642Q) /CSM/AF/AFH6-B/AFH642Q.Seq.d/                        123   2e-27
AFN769 (AFN769Q) /CSM/AF/AFN7-C/AFN769Q.Seq.d/                        121   8e-27
AFE240 (AFE240Q) /CSM/AF/AFE2-B/AFE240Q.Seq.d/                        105   5e-22
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X69171|X69171.1 D.discoideum mRNA of retrotransposable element DRE, subunit b.   274  7e-72  2
X69170|X69170.1 D.discoideum mRNA of retrotransposable element DRE, subtype b.   274  8e-72  2
X68231|X68231.1 D.discoideum genomic DNA of retrotransposable element DRE.   274  1e-71  2
AY293825|AY293825.1 Dictyostelium discoideum transposon cluster; tRNA-Leu gene, 5S ribosomal RNA pseudogene, and tRNA-Ser gene, complete sequence.   276  3e-71  2
X57034|X57034.1 D.discoideum retrotransposon DRE.                274  3e-71  2
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.   276  4e-71  2
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   276  1e-70  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   276  3e-70  2
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   276  4e-70  2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   276  4e-70  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69170_1(X69170|pid:none) D.discoideum mRNA of retrotransposable...   111   7e-24
X69171_1(X69171|pid:none) D.discoideum mRNA of retrotransposable...   111   7e-24
S20105(S20105;S30206;S30208;S30210;S25645) hypothetical protein ...   111   7e-24
(Q4L6U5) RecName: Full=Probable nicotinate-nucleotide adenylyltr...    32   5.0
protein update 2008.11. 8
PSORT 

 psg: 0.66  gvh: 0.40  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for CFI277 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFI277Z
3' end seq. 
>CFI277Z.Seq
NNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNATNTNNANNNATNNNNCAATANNNNNN
NNNGNNNAANNAAAGGNNNTANCNNNGNAANAAAAANTTANANAGNCAAATNATATNTTN
GANTTCANCAGNNCAAACANTGATGCAATAANAAAAATAGAATTNCCACTTTCAATCCCT
TCAAATCAATGGTTCTTCTCCTNTCCAATAAAACATATCATGAGTTTCAGCCCAACNTAT
GGTACACCATCGAAAATTATCGATTCACCAAGTAAATTGTTAAACACACCAAAAAAGAAA
CAACAAGACAAAACAAACAAGACCAACAAAACACCAGTCAAACCAAAATTGGGTGAATAT
GGACAAAAAAGCATAAAAACAAAAA
Length of 3' end seq. 385
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -