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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI248
Library CF
(Link to library)
Clone ID CFI248
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14964-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFI248 (CFI248Q) /CSM/CF/CFI2-B/CFI248Q.Seq.d/
XXXXXXXXXXATCTGATGCAATTACATCATCAGAGTATACCAATTATTTATTTAATGTTT
TTCTGTAATGTCATATTTGGAGTGGTTGCAATTGGAAGATTAAGTGATATGTGCCAAAAC
ATGTTTGGTAAAAGTAAAGTTGTTGGTTCTATGGTGGTATCAGTTAATGGTGCATTCAAT
TTATTCGGTAGATTAATGTTTGGTTTTGTTAGTGATAAATTTGGTAGAAAGAAATGTTAT
ATAGCAATGCTTACCATTCAATGTTTTTCAGTTGGTTTCTTAATAAAAGCAATGAAAGAT
TTAAACTATGAAGCTTTCATAGGACTAATTTGGATTTCCACACTTTGTTATGGTGGCTCA
TTCGGTGTAATACCAGCATTTTTAAATGACATGTTTGGTTCTAAAAATGTTGGAGCCACT
CATGGTTTAATTTTATCGGCATGGGCATTAGCTGGTGTTGGTGGTGGTATTGCTTTCTCA
TTTATCTATAATGATTTAATTAATAATCATGGCTATGGTCATCATTCAGCTTATCCTTAT
TTGGTTAATTATTATTGGATAGTTGGTTTCATTTGTGTGGGTTGGGTTTTAGTTTGGTTC
ATAAGAACAACTGTACCTGAAGTTTTCTTACCACCCATTAAAGGTCAAATCTTAAGAATT
AGGATATTTAATCGTTACTTAAGGATTAGTAAATCAAAAGGTTTTAATATAACAAATCAA
CAATTAAACAAGAA
sequence update 2001.11.22
Translated Amino Acid sequence 
---LMQLHHQSIPIIYLMFFCNVIFGVVAIGRLSDMCQNMFGKSKVVGSMVVSVNGAFNL
FGRLMFGFVSDKFGRKKCYIAMLTIQCFSVGFLIKAMKDLNYEAFIGLIWISTLCYGGSF
GVIPAFLNDMFGSKNVGATHGLILSAWALAGVGGGIAFSFIYNDLINNHGYGHHSAYPYL
VNYYWIVGFICVGWVLVWFIRTTVPEVFLPPIKGQILRIRIFNRYLRISKSKGFNITNQQ
LNK
Translated Amino Acid sequence (All Frames) 
Frame A:
---sdaitsseytnylfnvfl*chiwsgcnwkik*yvpkhvw*k*scwfyggis*wciqf
ir*invwfc***iw*kemlysnayhsmffswflnksnerfkl*sfhrtnldfhtllwwli
rcntsifk*hvwf*kcwshswfnfigmgiswcwwwycfliyl**fn**swlwssfslslf
g*llldswfhlcglgfslvhknnct*sfltth*rsnlkn*di*sllkd**ikrf*ynkst
ikqe


Frame B:
---LMQLHHQSIPIIYLMFFCNVIFGVVAIGRLSDMCQNMFGKSKVVGSMVVSVNGAFNL
FGRLMFGFVSDKFGRKKCYIAMLTIQCFSVGFLIKAMKDLNYEAFIGLIWISTLCYGGSF
GVIPAFLNDMFGSKNVGATHGLILSAWALAGVGGGIAFSFIYNDLINNHGYGHHSAYPYL
VNYYWIVGFICVGWVLVWFIRTTVPEVFLPPIKGQILRIRIFNRYLRISKSKGFNITNQQ
LNK


Frame C:
---*cnyiirvyqlfi*cfsvmsylewlqled*vicaktclvkvkllvlwwyqlmvhsiy
svd*clvllvinlvernvi*qclpfnvfqlvs**kq*ki*tmkls*d*fgfphfvmvahs
v*yqhf*mtclvlkmleplmv*fyrhgh*lvlvvvllshlsimi*liimamviiqliliw
liiig*lvsfvwvgf*fgs*eqlylkfsyhplkvks*elgylivt*glvnqkvli*qinn
*tr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI248 (CFI248Q) /CSM/CF/CFI2-B/CFI248Q.Seq.d/                       1435   0.0
SFH193 (SFH193Q) /CSM/SF/SFH1-D/SFH193Q.Seq.d/                       1376   0.0
AFL643 (AFL643Q) /CSM/AF/AFL6-B/AFL643Q.Seq.d/                       1372   0.0
CHD215 (CHD215Q) /CSM/CH/CHD2-A/CHD215Q.Seq.d/                       1354   0.0
SHJ742 (SHJ742Q) /CSM/SH/SHJ7-B/SHJ742Q.Seq.d/                       1352   0.0
SSG721 (SSG721Q) /CSM/SS/SSG7-A/SSG721Q.Seq.d/                       1229   0.0
AFK155 (AFK155Q) /CSM/AF/AFK1-C/AFK155Q.Seq.d/                       1160   0.0
SHJ842 (SHJ842Q) /CSM/SH/SHJ8-B/SHJ842Q.Seq.d/                        979   0.0
SSH613 (SSH613Q) /CSM/SS/SSH6-A/SSH613Q.Seq.d/                        924   0.0
AFD286 (AFD286Q) /CSM/AF/AFD2-D/AFD286Q.Seq.d/                        888   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1318   0.0    12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.001  13
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   0.001  13
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12 section 4 of 9 of the complete sequence.    30   0.003  13
AC137954|AC137954.3 Mus musculus clone RP23-61I24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   0.004  8
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    32   0.018  12
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   0.024  11
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    34   0.025  12
BG546630|BG546630.1 602574487F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE:4702677 5', mRNA sequence.    48   0.026  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.026  16
dna update 2003.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_163(AC116984|pid:none) Dictyostelium discoideum chromos...   436   e-121
AC116986_58(AC116986|pid:none) Dictyostelium discoideum chromoso...   173   4e-42
AM180088_132(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 ...    96   1e-18
AP008955_1135(AP008955|pid:none) Brevibacillus brevis NBRC 10059...    95   2e-18
AM406671_658(AM406671|pid:none) Lactococcus lactis subsp. cremor...    93   7e-18
CP001196_2670(CP001196|pid:none) Oligotropha carboxidovorans OM5...    93   7e-18
AF168363_3(AF168363|pid:none) Lactococcus lactis pyrrolidone car...    93   7e-18
CP000517_1515(CP000517|pid:none) Lactobacillus helveticus DPC 45...    92   2e-17
AE007317_1440(AE007317|pid:none) Streptococcus pneumoniae R6, co...    92   2e-17
BA000004_2528(BA000004|pid:none) Bacillus halodurans C-125 DNA, ...    91   3e-17
protein update 2009. 5.15
PSORT 

 psg: 0.97  gvh: 0.65  alm: 0.26  top: 0.53  tms: 0.20  mit: 0.27  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CFI248 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFI248Z
3' end seq. 
>CFI248Z.Seq
NNNNNNNNNNATCTGATGCAATTACATCATCAGAGTATACCAATTATTTATTTAATGTTT
TTCTGTAATGTCATATTTGGAGTGGTTGCAATTGGAAGATTAAGTGATATGTGCCAAAAC
ATGTTTGGTAAAAGTAAAGTTGTTGGTTCTATGGTGGTATCAGTTAATGGTGCATTCAAT
TTATTCGGTAGATTAATGTTTGGTTTTGTTAGTGATAAATTTGGTAGAAAGAAATGTTAT
ATAGCAATGCTTACCATTCAATGTTTTTCAGTTGGTTTCTTAATAAAAGCAATGAAAGAT
TTAAACTATGAAGCTTTCATAGGACTAATTTGGATTTCCACACTTTGTTATGGTGGCTCA
TTCGGTGTAATACCAGCATTTTTAAATGACATGTTTGGTTCTAAAAATGTTGGAGCCACT
CATGGTTTAATTTTATCGGCATGGGCATTAGCTGGTGTTGGTGGTGGTATTGCTTTCTCA
TTTATCTATAATGATTTAATTAATAATCATGGCTATGGTCATCATTCAGCTTATCCTTAT
TTGGTTAATTATTATTGGATAGTTGGTTTCATTTGTGTGGGTTGGGTTTTAGTTTGGTTC
ATAAGAACAACTGTACCTGAAGTTTTCTTACCACCCATTAAAGGTCAAATCTTAAGAATT
AGGATATTTAATCGTTACTTAAGGATTAGTAAATCAAAAGGTTTTAATATAACAAATCAA
CAATTAAACAAGAA
Length of 3' end seq. 734
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -