CFI236
Library CF
(Link to library)
Clone ID CFI236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08767-1
Original site URL
Representative seq. ID CFI236P
(Link to Original site)
Representative DNA sequence
>CFI236 (CFI236Q) /CSM/CF/CFI2-B/CFI236Q.Seq.d/
AATTGTTGGTGGTGGATTAGCAGGTAGTGCATTAGCATTATTATTAGGACAAAAAGGATT
TCCAATTCAAGTTATAGAAAAAAGACCAAAACAGAGTGAAAATATTAGAGCAAGATCAAT
TAATTTAGCATTATCAGATCGTGGTGTAAAAACATTGACAAAGACAGGATATGTTGATGA
TATATTAAAGATTGCAATACCAATGAAAGGTAGAATGATTCATTCATTAGATAGTGTTCA
AACATTTCAAGCATACAGTTCAGATTCAAATAAACATTTATATAGTGTATCACGTCAATT
ATTAAATGATAGATTACGTGAACATACAGAGAAATTGGAAAATGTTAAATTCATATTCTC
TGATGCTTGTAAATCTATTGATTTGAAGCAATGTACAATTCAAACTCAAGATTCCAATCA
AACAATCGAAGCATCCACAATCATCGGTTGCGATGGTGCCTTCTCTGCCGTCAGAGGATC
TATGGTGAAATTGGACAGACAAGACTACTCCCAATCTTATTTAAAGCATGGTTATAAGGA
ACTTTGCATACCAAGCGGCCCAAATCAAACATTTCAAATCGACAAAAACTCACTTCACAT
TTGGCXXXXXXXXXXGTTTCACATGCACCCTTTTCTTCCCATTCGACGGTCCATTAAGTT
TCTCATCCCTAGACACAAGAGAAAAGGTTGACCAATTCTTTAAAGATTATTTCCCTGATG
CCTATAAATTAATGCCAGATCTTTTGGATGACTATTTTGAGAATCCAACCTCATCATTAG
TCACCGTTAAAACTGAACCATACCATTATCAAGGTAAAGTAGTATTAGTTGGTGATGCTG
CACATGCTATCGTTCCATTCTATGGTCAAGGTATGAATGCAGCATTTGAAGATGTTTTAG
AATTATTTAATTGTTTTGAGGATAAATCACTCTACCCATCCTCCACTGATAAACCATTTG
ATAATGATCATTTCAATAATATTTATAAAAAATATCAAGAGAATAGAAAAGCAAATTCTG
ATGCTATTGCTGAAATGGCAGTTGAAAACTTTTTTGAAATGCGTGATCATGTTGGTGATG
CTTTATTCCTTTTCAAGAAAAAGGTTGAACATTTATTAGAAGTTAAATTCCCTTCACGTT
ATATTAGTCGTTATGAATTAATTTCTTTCTCAACTCAACCATACGCTTATGCTCAAAAAA
TTGGTTTAGCAAATCAACAAATCTTAAATGAATTAGTTAAAGGTAATGANATTAAATATT
AAAAAATNATTAGTTTAGCGATCAATAATAAAAAAA
sequence update 2001.11.22
Translated Amino Acid sequence
IVGGGLAGSALALLLGQKGFPIQVIEKRPKQSENIRARSINLALSDRGVKTLTKTGYVDD
ILKIAIPMKGRMIHSLDSVQTFQAYSSDSNKHLYSVSRQLLNDRLREHTEKLENVKFIFS
DACKSIDLKQCTIQTQDSNQTIEASTIIGCDGAFSAVRGSMVKLDRQDYSQSYLKHGYKE
LCIPSGPNQTFQIDKNSLHIW---

---FTCTLFFPFDGPLSFSSLDTREKVDQFFKDYFPDAYKLMPDLLDDYFENPTSSLVTV
KTEPYHYQGKVVLVGDAAHAIVPFYGQGMNAAFEDVLELFNCFEDKSLYPSSTDKPFDND
HFNNIYKKYQENRKANSDAIAEMAVENFFEMRDHVGDALFLFKKKVEHLLEVKFPSRYIS
RYELISFSTQPYAYAQKIGLANQQILNELVKGNXIKY*kxislainnkk


Translated Amino Acid sequence (All Frames)
Frame A:
ncwwwisr*cisiiirtkrisnssyrkktkte*ky*skin*fsiirswcknidkdric**
yikdcntner*ndsfir*csnissiqfrfk*tfi*citsiik**it*tyreigkc*ihil
*cl*iy*feamynsnsrfqsnnrsihnhrlrwcllcrqriygeigqtrllpilfkawl*g
tlhtkrpksnisnrqkltshl---

---vshapfsshstvh*vshp*tqekrltnslkiislmpin*cqifwmtilriqphh*sp
lklnhtiikvk*y*lvmlhmlsfhsmvkv*mqhlkmf*nylivlrinhsthpplinhlim
iisiifiknikriekqilmlllkwqlktflkcvimlvmlysfsrkrlniy*klnslhvil
vvmn*flsqlnhtlmlkklv*qinks*mn*lkvmxlnikkxlv*rsiikk

Frame B:
IVGGGLAGSALALLLGQKGFPIQVIEKRPKQSENIRARSINLALSDRGVKTLTKTGYVDD
ILKIAIPMKGRMIHSLDSVQTFQAYSSDSNKHLYSVSRQLLNDRLREHTEKLENVKFIFS
DACKSIDLKQCTIQTQDSNQTIEASTIIGCDGAFSAVRGSMVKLDRQDYSQSYLKHGYKE
LCIPSGPNQTFQIDKNSLHIW---

---fhmhpflpirrsikfliprhkrkg*pil*rlfp*cl*inarsfg*lf*esnliishr
*n*tiplsr*ssisw*cctcyrsilwsryecsi*rcfrii*lf*g*itlpilh**ti***
sfq*yl*kisre*kskf*cyc*ngs*klf*na*scw*cfipfqekg*tfirs*ipftly*
sl*infflnstirlcsknwfskstnlk*is*r**x*ilknx*fsdq**k

Frame C:
llvvd*qvvh*hyy*dkkdfqfkl*kkdqnrvkileqdqli*hyqivv*kh*qrqdmlmi
y*rlqyq*kve*fih*ivfkhfkhtvqiqiniyivyhvny*midyvniqrnwkmlnsysl
mlvnlli*snvqfklkipikqskhpqssvamvpslpsedlw*nwtdkttpnli*smvirn
fayqaaqikhfkstkthftfg---

---FTCTLFFPFDGPLSFSSLDTREKVDQFFKDYFPDAYKLMPDLLDDYFENPTSSLVTV
KTEPYHYQGKVVLVGDAAHAIVPFYGQGMNAAFEDVLELFNCFEDKSLYPSSTDKPFDND
HFNNIYKKYQENRKANSDAIAEMAVENFFEMRDHVGDALFLFKKKVEHLLEVKFPSRYIS
RYELISFSTQPYAYAQKIGLANQQILNELVKGNXIKY*kxislainnkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFI236 (CFI236Q) /CSM/CF/CFI2-B/CFI236Q.Seq.d/ 2484 0.0
AFK368 (AFK368Q) /CSM/AF/AFK3-C/AFK368Q.Seq.d/ 1176 0.0
VFH807 (VFH807Q) /CSM/VF/VFH8-A/VFH807Q.Seq.d/ 898 0.0
AFH354 (AFH354Q) /CSM/AF/AFH3-C/AFH354Q.Seq.d/ 807 0.0
SLI426 (SLI426Q) /CSM/SL/SLI4-B/SLI426Q.Seq.d/ 40 0.083
SFL425 (SFL425Q) /CSM/SF/SFL4-B/SFL425Q.Seq.d/ 40 0.083
VSC793 (VSC793Q) /CSM/VS/VSC7-D/VSC793Q.Seq.d/ 38 0.33
SSL668 (SSL668Q) /CSM/SS/SSL6-C/SSL668Q.Seq.d/ 38 0.33
SSK852 (SSK852Q) /CSM/SS/SSK8-C/SSK852Q.Seq.d/ 38 0.33
SSJ161 (SSJ161Q) /CSM/SS/SSJ1-C/SSJ161Q.Seq.d/ 38 0.33

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 34 6e-06 18
BI863798|BI863798.1 kx48e07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q21795 Q21795 R07B7.5 PROTEIN. [1] ;, mRNA sequence. 50 8e-05 2
AL360354|AL360354.1 Plasmodium vivax telomeric YAC clone, complete finished sequence. 42 2e-04 11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 44 2e-04 22
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome. 36 6e-04 10
AP001118|AP001118.1 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence, segment 1/2. 32 7e-04 18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 32 0.001 22
BX572093|BX572093.1 Prochlorococcus marinus MED4 complete genome; segment 4/5. 34 0.002 14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.002 18
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 32 0.002 18
dna update 2003.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54RE8) RecName: Full=Kynurenine 3-monooxygenase; EC=1... 433 0.0
CP000360_681(CP000360|pid:none) Acidobacteria bacterium Ellin345... 181 3e-77
CP000850_3759(CP000850|pid:none) Salinispora arenicola CNS-205, ... 186 6e-75
CP000667_3475(CP000667|pid:none) Salinispora tropica CNB-440, co... 182 1e-74
(A6H1P4) RecName: Full=Kynurenine 3-monooxygenase; EC=1... 196 5e-74
AY305285_1(AY305285|pid:none) Polaribacter filamentus kynurenine... 172 6e-72
AY305284_1(AY305284|pid:none) Gemmata sp. Wa1-1 kynurenine 3-mon... 168 1e-71
CU207366_2676(CU207366|pid:none) Gramella forsetii KT0803 comple... 179 8e-70
(A0M4X2) RecName: Full=Kynurenine 3-monooxygenase; EC=1... 179 8e-70
(Q86PM2) RecName: Full=Kynurenine 3-monooxygenase; EC=1... 141 8e-64
protein update 2009. 5.15
PSORT

psg: 0.92 gvh: 0.57 alm: 0.36 top: 0.67 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
20.0 %: mitochondrial
16.0 %: nuclear
8.0 %: peroxisomal
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for CFI236 is cyt

5' end seq. ID CFI236F
5' end seq.
>CFI236F.Seq
AATTGTTGGTGGTGGATTAGCAGGTAGTGCATTAGCATTATTATTAGGACAAAAAGGATT
TCCAATTCAAGTTATAGAAAAAAGACCAAAACAGAGTGAAAATATTAGAGCAAGATCAAT
TAATTTAGCATTATCAGATCGTGGTGTAAAAACATTGACAAAGACAGGATATGTTGATGA
TATATTAAAGATTGCAATACCAATGAAAGGTAGAATGATTCATTCATTAGATAGTGTTCA
AACATTTCAAGCATACAGTTCAGATTCAAATAAACATTTATATAGTGTATCACGTCAATT
ATTAAATGATAGATTACGTGAACATACAGAGAAATTGGAAAATGTTAAATTCATATTCTC
TGATGCTTGTAAATCTATTGATTTGAAGCAATGTACAATTCAAACTCAAGATTCCAATCA
AACAATCGAAGCATCCACAATCATCGGTTGCGATGGTGCCTTCTCTGCCGTCAGAGGATC
TATGGTGAAATTGGACAGACAAGACTACTCCCAATCTTATTTAAAGCATGGTTATAAGGA
ACTTTGCATACCAAGCGGCCCAAATCAAACATTTCAAATCGACAAAAACTCACTTCACAT
TTGGCNNNNNNNNNN
Length of 5' end seq. 615
3' end seq. ID CFI236Z
3' end seq.
>CFI236Z.Seq
NNNNNNNNNNGTTTCACATGCACCCTTTTCTTCCCATTCGACGGTCCATTAAGTTTCTCA
TCCCTAGACACAAGAGAAAAGGTTGACCAATTCTTTAAAGATTATTTCCCTGATGCCTAT
AAATTAATGCCAGATCTTTTGGATGACTATTTTGAGAATCCAACCTCATCATTAGTCACC
GTTAAAACTGAACCATACCATTATCAAGGTAAAGTAGTATTAGTTGGTGATGCTGCACAT
GCTATCGTTCCATTCTATGGTCAAGGTATGAATGCAGCATTTGAAGATGTTTTAGAATTA
TTTAATTGTTTTGAGGATAAATCACTCTACCCATCCTCCACTGATAAACCATTTGATAAT
GATCATTTCAATAATATTTATAAAAAATATCAAGAGAATAGAAAAGCAAATTCTGATGCT
ATTGCTGAAATGGCAGTTGAAAACTTTTTTGAAATGCGTGATCATGTTGGTGATGCTTTA
TTCCTTTTCAAGAAAAAGGTTGAACATTTATTAGAAGTTAAATTCCCTTCACGTTATATT
AGTCGTTATGAATTAATTTCTTTCTCAACTCAACCATACGCTTATGCTCAAAAAATTGGT
TTAGCAAATCAACAAATCTTAAATGAATTAGTTAAAGGTAATGANATTAAATATTAAAAA
ATNATTAGTTTAGCGATCAATAATAAAAAAA
Length of 3' end seq. 691
Connected seq. ID CFI236P
Connected seq.
>CFI236P.Seq
AATTGTTGGTGGTGGATTAGCAGGTAGTGCATTAGCATTATTATTAGGACAAAAAGGATT
TCCAATTCAAGTTATAGAAAAAAGACCAAAACAGAGTGAAAATATTAGAGCAAGATCAAT
TAATTTAGCATTATCAGATCGTGGTGTAAAAACATTGACAAAGACAGGATATGTTGATGA
TATATTAAAGATTGCAATACCAATGAAAGGTAGAATGATTCATTCATTAGATAGTGTTCA
AACATTTCAAGCATACAGTTCAGATTCAAATAAACATTTATATAGTGTATCACGTCAATT
ATTAAATGATAGATTACGTGAACATACAGAGAAATTGGAAAATGTTAAATTCATATTCTC
TGATGCTTGTAAATCTATTGATTTGAAGCAATGTACAATTCAAACTCAAGATTCCAATCA
AACAATCGAAGCATCCACAATCATCGGTTGCGATGGTGCCTTCTCTGCCGTCAGAGGATC
TATGGTGAAATTGGACAGACAAGACTACTCCCAATCTTATTTAAAGCATGGTTATAAGGA
ACTTTGCATACCAAGCGGCCCAAATCAAACATTTCAAATCGACAAAAACTCACTTCACAT
TTGGC----------GTTTCACATGCACCCTTTTCTTCCCATTCGACGGTCCATTAAGTT
TCTCATCCCTAGACACAAGAGAAAAGGTTGACCAATTCTTTAAAGATTATTTCCCTGATG
CCTATAAATTAATGCCAGATCTTTTGGATGACTATTTTGAGAATCCAACCTCATCATTAG
TCACCGTTAAAACTGAACCATACCATTATCAAGGTAAAGTAGTATTAGTTGGTGATGCTG
CACATGCTATCGTTCCATTCTATGGTCAAGGTATGAATGCAGCATTTGAAGATGTTTTAG
AATTATTTAATTGTTTTGAGGATAAATCACTCTACCCATCCTCCACTGATAAACCATTTG
ATAATGATCATTTCAATAATATTTATAAAAAATATCAAGAGAATAGAAAAGCAAATTCTG
ATGCTATTGCTGAAATGGCAGTTGAAAACTTTTTTGAAATGCGTGATCATGTTGGTGATG
CTTTATTCCTTTTCAAGAAAAAGGTTGAACATTTATTAGAAGTTAAATTCCCTTCACGTT
ATATTAGTCGTTATGAATTAATTTCTTTCTCAACTCAACCATACGCTTATGCTCAAAAAA
TTGGTTTAGCAAATCAACAAATCTTAAATGAATTAGTTAAAGGTAATGANATTAAATATT
AAAAAATNATTAGTTTAGCGATCAATAATAAAAAAA
Length of connected seq. 1286
Full length Seq ID -
Full length Seq. -
Length of full length seq. -