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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI230
Library CF
(Link to library)
Clone ID CFI230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16347-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFI230 (CFI230Q) /CSM/CF/CFI2-B/CFI230Q.Seq.d/
XXXXXXXXXXGTTACCGTACCAATTCTTTGGTGATCTTCACTGAATATAGTAGACCACCA
GAAGTCAAATATCCAATCCAAAACGAACCAATGCTATGCAGTGATTTTGAAATTCATAAA
GGATGCTGCTAAATGGAATATCGATCTCAACAATTTCTCATTGGTTGGCGATAGTGCCGG
TGGTAATATGGCTATTGTGTTGGGGTTGATGGCAAAAGTTAGAAATGGACCTTCGTTCAA
GAGAATTTGTCTCTACTATCCAGCCATTGATAGCGGTATGAATTCAGGTTCCTATAAAGA
ATTCCATAATGATTTCTATCTTACTAAAGATGGTATGAAATGGTTCTGGGATGCATACAC
CAACAGTCCAAAAGACACCAATGAAATCTACTGCTCTCCTTCCAAATGCAAAGAATCTGA
TGTCATGGGTTTCCCAGAAACAATGATCATCAATGGTGAAGCTGATGTCCTCCGTGATGA
AGGTGAAAATTTCGCTAGACTATTACGTAAAGCAAATGTTCCAGTAACTCACCTAAGAAT
TCAAGCAATGGTTCATGATTTCGTTGCTCTAAACTGTCTTGATCAATCAAAAGCATGTAG
AGTTGCAATGGATTCCTCAATNATTTCTTAAATAAATCTCATGATCCAAATGCAACTAAA
CCAAAATGTNAAAAAATCAATCAATCAATCAATCAATCAATCAATCAATCAATTANAAAT
AAACACATT
sequence update 2001.11.22
Translated Amino Acid sequence 
---tvpilw*SSLNIVDHQKSNIQSKTNQCYAVILKFIKDAAKWNIDLNNFSLVGDSAGG
NMAIVLGLMAKVRNGPSFKRICLYYPAIDSGMNSGSYKEFHNDFYLTKDGMKWFWDAYTN
SPKDTNEIYCSPSKCKESDVMGFPETMIINGEADVLRDEGENFARLLRKANVPVTHLRIQ
AMVHDFVALNCLDQSKACRVAMDSSXIS*inlmiqmqlnqnvkksinqsinqsinqlxin
t
Translated Amino Acid sequence (All Frames) 
Frame A:
---lpyqffgdlh*i**ttrsqisnpkrtnamq*f*ns*rmllngisistishwlaivpv
viwllcwg*wqklemdlrsrefvstiqpliav*iqvpiknsimisillkmv*ngsgmhtp
tvqktpmkstallpnaknlmswvsqkq*ssmvklmssvmkvkisldyyvkqmfq*lt*ef
kqwfmisll*tvlinqkhvelqwipqxflk*is*skcn*tkmxknqsinqsinqsinxk*
th


Frame B:
---yrtnslvifteysrppevkypiqnepmlcsdfeihkgcc*meyrsqqfligwr*crw
*ygycvgvdgks*kwtfvqenlsllssh**ryefrfl*rip**flsy*rwyemvlgcihq
qskrhq*nlllsfqmqri*chgfprnndhqw*s*cpp**r*kfr*tit*skcssnspkns
sngs*frcskls*siksm*scngflnxflnkshdpnatkpkcxkinqsinqsinqsixnk
hi


Frame C:
---tvpilw*SSLNIVDHQKSNIQSKTNQCYAVILKFIKDAAKWNIDLNNFSLVGDSAGG
NMAIVLGLMAKVRNGPSFKRICLYYPAIDSGMNSGSYKEFHNDFYLTKDGMKWFWDAYTN
SPKDTNEIYCSPSKCKESDVMGFPETMIINGEADVLRDEGENFARLLRKANVPVTHLRIQ
AMVHDFVALNCLDQSKACRVAMDSSXIS*inlmiqmqlnqnvkksinqsinqsinqlxin
t
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI230 (CFI230Q) /CSM/CF/CFI2-B/CFI230Q.Seq.d/                       1285   0.0
CFI721 (CFI721Q) /CSM/CF/CFI7-A/CFI721Q.Seq.d/                       1271   0.0
CFB236 (CFB236Q) /CSM/CF/CFB2-B/CFB236Q.Seq.d/                       1263   0.0
CFA795 (CFA795Q) /CSM/CF/CFA7-D/CFA795Q.Seq.d/                       1263   0.0
CFA642 (CFA642Q) /CSM/CF/CFA6-B/CFA642Q.Seq.d/                       1263   0.0
SFK642 (SFK642Q) /CSM/SF/SFK6-B/SFK642Q.Seq.d/                       1255   0.0
SFI225 (SFI225Q) /CSM/SF/SFI2-B/SFI225Q.Seq.d/                       1255   0.0
SFH419 (SFH419Q) /CSM/SF/SFH4-A/SFH419Q.Seq.d/                       1255   0.0
SFH139 (SFH139Q) /CSM/SF/SFH1-B/SFH139Q.Seq.d/                       1255   0.0
SFH117 (SFH117Q) /CSM/SF/SFH1-A/SFH117Q.Seq.d/                       1255   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC137069|AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.    52   0.011  1
AC068287|AC068287.5 Homo sapiens BAC clone RP11-532L9 from 2, complete sequence.    46   0.69   1
AX571766|AX571766.1 Sequence 4985 from Patent WO02077021.          32   1.4    12
AF262040|AF262040.1 Arabidopsis thaliana BAC T10I18.               44   2.7    1
AC137985|AC137985.16 Medicago truncatula clone mth2-14m10, WORKING DRAFT SEQUENCE, 7 ordered pieces.    32   4.9    2
AC147498|AC147498.6 Medicago truncatula clone mth2-6f18, WORKING DRAFT SEQUENCE, 11 unordered pieces.    32   4.9    2
AC147499|AC147499.5 Medicago truncatula clone mth2-22h5, complete sequence.    32   4.9    2
CC538591|CC538591.1 CH240_418B17.T7 CHORI-240 Bos taurus genomic clone CH240_418B17, genomic survey sequence.    40   5.7    2
AC068957|AC068957.1 Homo sapiens chromosome 21 clone CTD-2017B4 map 21, LOW-PASS SEQUENCE SAMPLING.    36   6.6    2
CG950489|CG950489.1 MBEDK47TFC mth2 Medicago truncatula genomic clone 32H21, genomic survey sequence.    32   6.6    2
dna update 2004. 2. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000750_1934(CP000750|pid:none) Kineococcus radiotolerans SRS30...   160   1e-41
(P14326) RecName: Full=Vegetative-specific protein H5;                148   3e-37
AP006618_3275(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...   145   1e-36
AP009493_770(AP009493|pid:none) Streptomyces griseus subsp. gris...   150   3e-36
CP001074_3223(CP001074|pid:none) Rhizobium etli CIAT 652, comple...   147   5e-36
CP001191_2811(CP001191|pid:none) Rhizobium leguminosarum bv. tri...   144   1e-35
CP000133_3066(CP000133|pid:none) Rhizobium etli CFN 42, complete...   144   3e-35
CR628336_1860(CR628336|pid:none) Legionella pneumophila str. Par...   144   7e-35
CR628337_1860(CR628337|pid:none) Legionella pneumophila str. Len...   143   1e-34
AE017354_1851(AE017354|pid:none) Legionella pneumophila subsp. p...   143   1e-34
protein update 2009. 5.15
PSORT 

 psg: 0.58  gvh: 0.39  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFI230 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFI230Z
3' end seq. 
>CFI230Z.Seq
NNNNNNNNNNGTTACCGTACCAATTCTTTGGTGATCTTCACTGAATATAGTAGACCACCA
GAAGTCAAATATCCAATCCAAAACGAACCAATGCTATGCAGTGATTTTGAAATTCATAAA
GGATGCTGCTAAATGGAATATCGATCTCAACAATTTCTCATTGGTTGGCGATAGTGCCGG
TGGTAATATGGCTATTGTGTTGGGGTTGATGGCAAAAGTTAGAAATGGACCTTCGTTCAA
GAGAATTTGTCTCTACTATCCAGCCATTGATAGCGGTATGAATTCAGGTTCCTATAAAGA
ATTCCATAATGATTTCTATCTTACTAAAGATGGTATGAAATGGTTCTGGGATGCATACAC
CAACAGTCCAAAAGACACCAATGAAATCTACTGCTCTCCTTCCAAATGCAAAGAATCTGA
TGTCATGGGTTTCCCAGAAACAATGATCATCAATGGTGAAGCTGATGTCCTCCGTGATGA
AGGTGAAAATTTCGCTAGACTATTACGTAAAGCAAATGTTCCAGTAACTCACCTAAGAAT
TCAAGCAATGGTTCATGATTTCGTTGCTCTAAACTGTCTTGATCAATCAAAAGCATGTAG
AGTTGCAATGGATTCCTCAATNATTTCTTAAATAAATCTCATGATCCAAATGCAACTAAA
CCAAAATGTNAAAAAATCAATCAATCAATCAATCAATCAATCAATCAATCAATTANAAAT
AAACACATT
Length of 3' end seq. 729
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -