CFI225
Library CF
(Link to library)
Clone ID CFI225
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFI225 (CFI225Q) /CSM/CF/CFI2-B/CFI225Q.Seq.d/
ATTGTAGTATTTTGTTNTATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTA
AATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAA
AAAXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
csilxysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
ivvfcxiqikyqyn*kklklnl*nqfvtktsnlkkkkpkk---


Frame B:
l*yfvxfklnintikks*n*ickinl*qklvi*kkknqkk---


Frame C:
csilxysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL174 (SFL174Q) /CSM/SF/SFL1-D/SFL174Q.Seq.d/ 147 5e-35
SFJ892 (SFJ892Q) /CSM/SF/SFJ8-D/SFJ892Q.Seq.d/ 147 5e-35
SFH303 (SFH303Q) /CSM/SF/SFH3-A/SFH303Q.Seq.d/ 147 5e-35
SFG217 (SFG217Q) /CSM/SF/SFG2-A/SFG217Q.Seq.d/ 147 5e-35
SFF336 (SFF336Q) /CSM/SF/SFF3-B/SFF336Q.Seq.d/ 147 5e-35
SFD775 (SFD775Q) /CSM/SF/SFD7-D/SFD775Q.Seq.d/ 147 5e-35
SFD158 (SFD158Q) /CSM/SF/SFD1-C/SFD158Q.Seq.d/ 147 5e-35
SFC609 (SFC609Q) /CSM/SF/SFC6-A/SFC609Q.Seq.d/ 147 5e-35
CHK102 (CHK102Q) /CSM/CH/CHK1-A/CHK102Q.Seq.d/ 147 5e-35
CHG246 (CHG246Q) /CSM/CH/CHG2-B/CHG246Q.Seq.d/ 147 5e-35

own update 2002.11.19
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 2e-23 3
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 80 3e-23 4
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 3e-21 3
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 80 1e-20 7
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 80 8e-12 1
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 52 1e-07 2
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING. 46 0.11 1
BM424783|BM424783.1 IpSpn00680 Spleen cDNA library Ictalurus punctatus cDNA 5', mRNA sequence. 28 0.19 3
AF031860|AF031860.1 Rhipicephalus compositus 12S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence. 40 0.27 2
BX088532|BX088532.7 Zebrafish DNA sequence from clone CH211-127E17 in linkage group 8. 36 0.33 4
dna update 2004. 2. 3
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 58,880,167
protein update 2009. 5.15
PSORT -
5' end seq. ID CFI225F
5' end seq.
>CFI225F.Seq
ATTGTAGTATTTTGTTNTATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTA
AATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAA
AAANNNNNNNNNN
Length of 5' end seq. 133
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -