>CFI211 (CFI211Q) /CSM/CF/CFI2-A/CFI211Q.Seq.d/
ATTTTTATTTATAGAATNATAATAATAATAAATAAGTAAAAATAAAAAAATGAAATAATA
AATCTTGTAATTTATTTTTTTCTTTTTGGAATAGTATATTCTCAACCACCACAACCACAC
TATGGTGTATTTGAATTATCAGCATTACGTGGTGGAGAAAATAAACTTCTGTATAGGGGT
GCCAATCTAAAAGCTTTTTCTCAAACACCAGCTAGACCAGGAGTGATTGTTACTTTTTTC
AGATACAATGGAGGTATTGACATTTACTATTCCCATAGGATACAAATTGTTGCAAATCTT
GAAGAGTCAGCGCGTGTAATGACCCAAACTCCAAATAATATGGCTACTAGTGGTAGAATT
GTTTCATATGCTTATCAAGAGATATCTACCCAGGTTTTCAATGGACTAAATGTTGGCAAT
TTGAATGCTCTAATCAATGGACCCAATTTAGTAACACCAGCTGGGCCATTTATTCCACAT
GGAAGGTTGATTAATGTCCTTGCACTTTTGGCGAGATGGATTAGATTAAATTTTTCAACA
AATATACAAATCATTGAATTCATTGATGATCATCCAAGTTTTCCAAAACCTTCTGAAAGC
TATGATAGCAATGXXXXXXXXXXATCCTGCAGGATTATTGGGATTAGTTAGTGAAGGTAT
TAAAGAGGCTGCCAACGGTGTTAAAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAG
TATTTTCAGCCATGGTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGT
TGAAAATGAAGGTAAAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAA
TGATGGTAAGGCAGTTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGG
TAAGGCAGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGC
AGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGT
CAATGCTGGTGGATCTGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGC
TGGTGAAACTGTTGTTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGA
AACTGTTATTGATTCCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGC
AATTGCTGATATTGAAAAAAATGGTGCACAATTTGCAAGAGGTGTTGTAGAAATGGGTGA
AGCAGCTGGTGATGTTGTTAAGAAAGGCNAAGTCTCAGCGGTAGGT

ifiyrxiiiink*k*KNEIINLVIYFFLFGIVYSQPPQPHYGVFELSALRGGENKLLYRG
ANLKAFSQTPARPGVIVTFFRYNGGIDIYYSHRIQIVANLEESARVMTQTPNNMATSGRI
VSYAYQEISTQVFNGLNVGNLNALINGPNLVTPAGPFIPHGRLINVLALLARWIRLNFST
NIQIIEFIDDHPSFPKPSESYDSN---

---PAGLLGLVSEGIKEAANGVKVTGVNIWNKAKSIFSHGKEAASSKTSAAVVKVENEGK
AVVKAGESVVSTVKNDGKAVVNAGESVVTSVKNEGKAVVNAGESVVTSVKNNGKAVVNAG
ESVVTSVKNEGKAVVNAGGSVVTSVKNNGKAVVNAGETVVQTVKKEASVIVKTGETVIDS
TRKGGAAFVSEGGAAIADIEKNGAQFARGVVEMGEAAGDVVKKGXVSAVG

Frame A:
ifiyrxiiiink*k*KNEIINLVIYFFLFGIVYSQPPQPHYGVFELSALRGGENKLLYRG
ANLKAFSQTPARPGVIVTFFRYNGGIDIYYSHRIQIVANLEESARVMTQTPNNMATSGRI
VSYAYQEISTQVFNGLNVGNLNALINGPNLVTPAGPFIPHGRLINVLALLARWIRLNFST
NIQIIEFIDDHPSFPKPSESYDSN---

---ilqdywd*lvkvlkrlptvlkslv*ifgikpkvfsamvkklpvvkqvlpl*klkmkv
kqlsklvnpl*vl*kmmvrqlsmlanll*pl*kmkvrqlsmlvnpl*pl*kimvrqlsml
vnpl*pl*kmkvrqlsmlvdll*pl*kimvrqlsmlvkllfkl*kkkpqsl*klvkllli
pqekealhlflkvvlqllilkkmvhnlqevl*kwvkqlvmllrkaksqr*

Frame B:
flfiex****isknkkmk**il*fifffle*yilnhhnhtmvylnyqhyvvekinfcigv
pi*klflkhqldqe*lllfsdtmevltftipigykllqilksqrv**pklqiiwllvvel
fhmlikrylprfsmd*mlai*ml*smdpi**hqlghlfhmeg*lmslhfwrdgld*ifqq
iykslnslmiiqvfqnllkamiam---

---scriigis**ry*rgcqrc*shwckyle*sqkyfqpw*rscq**nkccrcks*k*r*
sscqsw*irckycek*w*gscqcwriccnlcek*r*gscqcw*ircnlckk*w*gscqcw
*ircnlcek*r*gscqcwwiccnlckk*w*gscqcw*nccsncekrslshcenw*ncy*f
hkkrrrcicf*rwccnc*y*kkwctickrccrng*ssw*cc*erxslsgr

Frame C:
fyl*nxnnnk*vkikk*nnkscnlffsfwnsifstttttlwci*iisitwwrk*tsv*gc
qsksffsnts*trsdcyffqiqwry*hllfp*dtnccks*rvsacndpnsk*ygy*w*nc
ficlsrdiypgfqwtkcwqfecsnqwtqfsntswaiystwkvd*cpctfgemd*ikffnk
ytnh*ih**sskfsktf*kl**q---

---PAGLLGLVSEGIKEAANGVKVTGVNIWNKAKSIFSHGKEAASSKTSAAVVKVENEGK
AVVKAGESVVSTVKNDGKAVVNAGESVVTSVKNEGKAVVNAGESVVTSVKNNGKAVVNAG
ESVVTSVKNEGKAVVNAGGSVVTSVKNNGKAVVNAGETVVQTVKKEASVIVKTGETVIDS
TRKGGAAFVSEGGAAIADIEKNGAQFARGVVEMGEAAGDVVKKGXVSAVG

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI211 (CFI211Q) /CSM/CF/CFI2-A/CFI211Q.Seq.d/                       2309   0.0
CFG137 (CFG137Q) /CSM/CF/CFG1-B/CFG137Q.Seq.d/                       1279   0.0
CFI752 (CFI752Q) /CSM/CF/CFI7-C/CFI752Q.Seq.d/                       1263   0.0
CHD107 (CHD107Q) /CSM/CH/CHD1-A/CHD107Q.Seq.d/                       1253   0.0
CHC855 (CHC855Q) /CSM/CH/CHC8-C/CHC855Q.Seq.d/                       1251   0.0
CFH413 (CFH413Q) /CSM/CF/CFH4-A/CFH413Q.Seq.d/                       1249   0.0
CHD584 (CHD584Q) /CSM/CH/CHD5-D/CHD584Q.Seq.d/                       1203   0.0
SFG511 (SFG511Q) /CSM/SF/SFG5-A/SFG511Q.Seq.d/                       1183   0.0
CHC426 (CHC426Q) /CSM/CH/CHC4-B/CHC426Q.Seq.d/                       1156   0.0
SFF453 (SFF453Q) /CSM/SF/SFF4-C/SFF453Q.Seq.d/                       1146   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF106592|AF106592.1 Caenorhabditis elegans cosmid D1037, complete sequence.    38   0.090  5
BZ280484|BZ280484.1 CH230-480C10.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-480C10, genomic survey sequence.    42   0.22   2
AP004287|AP004287.2 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1471H7.    34   0.44   8
AC092975|AC092975.6 Homo sapiens chromosome 3q clone RP11-90F21, WORKING DRAFT SEQUENCE, 30 unordered pieces.    38   0.57   12
AC112895|AC112895.4 Rattus norvegicus clone CH230-151H14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38   0.99   7
AF100466|AF100466.2 Dengue virus type 2 strain Mara4 polyprotein gene, complete cds.    46   1.3    1
AF489932|AF489932.1 Dengue Virus Type 2 strain BR64022, complete genome.    46   1.3    1
CA305082|CA305082.1 As_adfo_27F02_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_27F02 5', mRNA sequence.    46   1.3    1
CA304740|CA304740.1 As_adfo_21G05_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_21G05 5', mRNA sequence.    46   1.3    1
AC008572|AC008572.6 Homo sapiens chromosome 5 clone CTC-551A13, complete sequence.    34   1.5    9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016817_40(AE016817|pid:none) Ashbya gossypii (= Eremothecium g...    68   6e-10
CR767821_118(CR767821|pid:none) Ehrlichia ruminantium strain Wel...    64   9e-09
CR925678_108(CR925678|pid:none) Ehrlichia ruminantium str. Welge...    62   3e-08
AE014075_3573(AE014075|pid:none) Escherichia coli CFT073, comple...    58   8e-07
AE005674_2993(AE005674|pid:none) Shigella flexneri 2a str. 301, ...    58   8e-07
AF200692_21(AF200692|pid:none) Shigella flexneri 2a she pathogen...    58   8e-07
CU928145_3285(CU928145|pid:none) Escherichia coli 55989 chromoso...    57   1e-06
CP000617_291(CP000617|pid:none) Burkholderia vietnamiensis G4 pl...    57   2e-06
AF308673_2(AF308673|pid:none) Cowdria ruminantium clone 26hw hyp...    57   2e-06
CP000394_1605(CP000394|pid:none) Granulibacter bethesdensis CGDN...    56   3e-06

 psg: 0.98  gvh: 0.66  alm: 0.41  top: 0.43  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFI211 is exc

>CFI211F.Seq
ATTTTTATTTATAGAATNATAATAATAATAAATAAGTAAAAATAAAAAAATGAAATAATA
AATCTTGTAATTTATTTTTTTCTTTTTGGAATAGTATATTCTCAACCACCACAACCACAC
TATGGTGTATTTGAATTATCAGCATTACGTGGTGGAGAAAATAAACTTCTGTATAGGGGT
GCCAATCTAAAAGCTTTTTCTCAAACACCAGCTAGACCAGGAGTGATTGTTACTTTTTTC
AGATACAATGGAGGTATTGACATTTACTATTCCCATAGGATACAAATTGTTGCAAATCTT
GAAGAGTCAGCGCGTGTAATGACCCAAACTCCAAATAATATGGCTACTAGTGGTAGAATT
GTTTCATATGCTTATCAAGAGATATCTACCCAGGTTTTCAATGGACTAAATGTTGGCAAT
TTGAATGCTCTAATCAATGGACCCAATTTAGTAACACCAGCTGGGCCATTTATTCCACAT
GGAAGGTTGATTAATGTCCTTGCACTTTTGGCGAGATGGATTAGATTAAATTTTTCAACA
AATATACAAATCATTGAATTCATTGATGATCATCCAAGTTTTCCAAAACCTTCTGAAAGC
TATGATAGCAATGNNNNNNNNNN

>CFI211Z.Seq
NNNNNNNNNNATCCTGCAGGATTATTGGGATTAGTTAGTGAAGGTATTAAAGAGGCTGCC
AACGGTGTTAAAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGTATTTTCAGCCAT
GGTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTTGAAAATGAAGGT
AAAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAATGATGGTAAGGCA
GTTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTC
AATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCT
GGTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTCAATGCTGGTGGA
TCTGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCTGGTGAAACTGTT
GTTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAAACTGTTATTGAT
TCCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCAATTGCTGATATT
GAAAAAAATGGTGCACAATTTGCAAGAGGTGTTGTAGAAATGGGTGAAGCAGCTGGTGAT
GTTGTTAAGAAAGGCNAAGTCTCAGCGGTAGGT

>CFI211P.Seq
ATTTTTATTTATAGAATNATAATAATAATAAATAAGTAAAAATAAAAAAATGAAATAATA
AATCTTGTAATTTATTTTTTTCTTTTTGGAATAGTATATTCTCAACCACCACAACCACAC
TATGGTGTATTTGAATTATCAGCATTACGTGGTGGAGAAAATAAACTTCTGTATAGGGGT
GCCAATCTAAAAGCTTTTTCTCAAACACCAGCTAGACCAGGAGTGATTGTTACTTTTTTC
AGATACAATGGAGGTATTGACATTTACTATTCCCATAGGATACAAATTGTTGCAAATCTT
GAAGAGTCAGCGCGTGTAATGACCCAAACTCCAAATAATATGGCTACTAGTGGTAGAATT
GTTTCATATGCTTATCAAGAGATATCTACCCAGGTTTTCAATGGACTAAATGTTGGCAAT
TTGAATGCTCTAATCAATGGACCCAATTTAGTAACACCAGCTGGGCCATTTATTCCACAT
GGAAGGTTGATTAATGTCCTTGCACTTTTGGCGAGATGGATTAGATTAAATTTTTCAACA
AATATACAAATCATTGAATTCATTGATGATCATCCAAGTTTTCCAAAACCTTCTGAAAGC
TATGATAGCAATG----------ATCCTGCAGGATTATTGGGATTAGTTAGTGAAGGTAT
TAAAGAGGCTGCCAACGGTGTTAAAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAG
TATTTTCAGCCATGGTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGT
TGAAAATGAAGGTAAAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAA
TGATGGTAAGGCAGTTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGG
TAAGGCAGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGC
AGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGT
CAATGCTGGTGGATCTGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGC
TGGTGAAACTGTTGTTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGA
AACTGTTATTGATTCCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGC
AATTGCTGATATTGAAAAAAATGGTGCACAATTTGCAAGAGGTGTTGTAGAAATGGGTGA
AGCAGCTGGTGATGTTGTTAAGAAAGGCNAAGTCTCAGCGGTAGGT