>CFI189 (CFI189Q) /CSM/CF/CFI1-D/CFI189Q.Seq.d/
ATTTTTATATTTATTTATTTATATAAATAAACTACACATTATAATGTCTGTAACTTTAAA
AAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATNNGTAGCAATTAATGGTGA
CCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTATTAGAAATGTAAA
GAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCACTGTTGCAAAGTA
TGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATTTACGTATTTGGGA
TACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGAATGGTGCAATCCT
TGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTGATGGTAAAGAGAG
ATTTGGTGCAGCCATCCTTTGGGATAGTGGTTCATCATGTGGTGAAATCACTGGTCACTC
AAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTCCATTCAGAGCCGCCACTGGTAG
TGAAGATTTTGCAGTCAATTGGTTCGAAGGTCXXXXXXXXXXTGGTCCAGCTCACAAGAA
TCAAATTACCTCAATTAAAATCAATGGTGATCAACTCATTACTTGCGCTATGGATGATAG
TGTTAAAATCTCAAGTATCTCTAAAAAAACCTATGGTGAAAGTATTGGTGTAGATAGTCC
AGCTCAAGCTGTTGCTTTCTCTGGTGATGTTGTCGTTGCTGTCTCAATGAAAACCATTTA
TGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGGAACCAACCTCTGT
TGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGATTCACGTTTTCAC
TCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATCGTGGTGCTATTAC
CGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTTCAAATCGTGAAGT
TATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACCATACCGCTCGTAT
TAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTTCACTCGATTCTCA
AATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAGTTAAAAACTCTCA
TTTAGGTGGTGTCAATGATGTATTTAGGTTCAAACAANAAATTTTCTCTGCAGGTA

FLYLFIYINKLHIIMSVTLKNIIAPTPATTRGKXVAINGDPKGENIVYASGSSIIIRNVK
NPMVADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNGAIL
DIAWTSDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRAATGS
EDFAVNWFEG---

---GPAHKNQITSIKINGDQLITCAMDDSVKISSISKKTYGESIGVDSPAQAVAFSGDVV
VAVSMKTIYVIKGGKIVSQTAATWEPTSVAINDTEVSVGGKDNKIHVFTLSGNNLTASHT
LDNHRGAITDLSYSPCGKYLASGCSNREVIVWSGKEAKSKGWVNHTARINAVAWSNDSKF
VASASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVFRFKQXIFSAG

Frame A:
ififiylyk*tthynvcnfkkyyctntsnysw*xxsn*w*pkg*kycickw*qyyy*kck
esngsryll*tsmsnhcckvctkw*lyckw*csr*ftylgyitkgtylksnlqsiewcnp
*ycmdir*stfscsw*w*reiwcshplg*wfimw*nhwslkddsll*h*inssiqsrhw*
*rfcsqlvrr---

---wsssqesnyln*nqw*sthylryg**c*nlkyl*knlw*kywcr*ssssccflw*cc
rcclnenhlch*rw*nrftncchlgtnlcchq*y*sfsrw*r*qdsrfhsqw*qfncqsy
fr*sswcyyrsfiltmw*ifsfrlfks*syrlew*rsqi*rlg*pyrsy*ccrlv**f*i
cclcftrfsnlhlec*ksnrftsss*klsfrwcq*ci*vqtxnflcr

Frame B:
FLYLFIYINKLHIIMSVTLKNIIAPTPATTRGKXVAINGDPKGENIVYASGSSIIIRNVK
NPMVADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNGAIL
DIAWTSDNQRLVVVGDGKERFGAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRAATGS
EDFAVNWFEG---

---GPAHKNQITSIKINGDQLITCAMDDSVKISSISKKTYGESIGVDSPAQAVAFSGDVV
VAVSMKTIYVIKGGKIVSQTAATWEPTSVAINDTEVSVGGKDNKIHVFTLSGNNLTASHT
LDNHRGAITDLSYSPCGKYLASGCSNREVIVWSGKEAKSKGWVNHTARINAVAWSNDSKF
VASASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVFRFKQXIFSAG

Frame C:
fyiylfi*inytl*cl*l*killhqhqqllvvnx*qlmvtqrvkilymqvvavlllem*r
iqw*qiftmnihvkpllqsmhqvviilqvvmfkviyvfgihykrnis*kqltky*mvqsl
ilhghqiinv*l*lvmvkrdlvqpsfgivvhhvvkslvtqr*fslvtlnqlvhsepplvv
kilqsigskv---

---vqltriklpqlksmvinsllalwmivlksqvslkkpmvkvlv*ivqlklllslvmls
llsq*kpfmslkvvksfhkllplgnqpllpsmilkfqsvvkitrftfslsvvti*lpvil
*iiivvllpifhthhvvni*lqvvqivklsfgvvkkpnlkvgltiplvlmlslglmilnl
lpllhsilkftfgmlkiqplhqfklktli*vvsmmylgsnxkfslqv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI189 (CFI189Q) /CSM/CF/CFI1-D/CFI189Q.Seq.d/                       2371   0.0
VHO132 (VHO132Q) /CSM/VH/VHO1-B/VHO132Q.Seq.d/                       1275   0.0
VHN440 (VHN440Q) /CSM/VH/VHN4-B/VHN440Q.Seq.d/                       1275   0.0
CFH889 (CFH889Q) /CSM/CF/CFH8-D/CFH889Q.Seq.d/                       1275   0.0
AFO469 (AFO469Q) /CSM/AF/AFO4-C/AFO469Q.Seq.d/                       1275   0.0
AFL186 (AFL186Q) /CSM/AF/AFL1-D/AFL186Q.Seq.d/                       1275   0.0
AFI778 (AFI778Q) /CSM/AF/AFI7-D/AFI778Q.Seq.d/                       1275   0.0
AFD848 (AFD848Q) /CSM/AF/AFD8-B/AFD848Q.Seq.d/                       1271   0.0
CFF734 (CFF734Q) /CSM/CF/CFF7-B/CFF734Q.Seq.d/                       1267   0.0
CFF370 (CFF370Q) /CSM/CF/CFF3-C/CFF370Q.Seq.d/                       1267   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U36936|U36936.1 Dictyostelium discoideum WD40 repeat protein 2 mRNA, compete cds.  1112   0.0    3
AZ408166|AZ408166.1 1M0179C13F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0179C13 F, DNA sequence.    50   6e-10  2
AC100713|AC100713.1 Mus musculus clone RP23-169O14, LOW-PASS SEQUENCE SAMPLING.    50   1e-07  2
AC128662|AC128662.4 Mus musculus chromosome 6 clone RP24-440E3, complete sequence.    50   4e-07  2
AC126607|AC126607.6 Mus musculus chromosome 6, clone RP24-113M16, complete sequence.    50   4e-07  2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    38   1e-05  13
AC005504|AC005504.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    62   2e-05  6
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence.    62   2e-05  7
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    62   2e-05  8
AZ333507|AZ333507.1 1M0062E02R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0062E02 R, DNA sequence.    48   3e-05  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36936_1(U36936|pid:none) Dictyostelium discoideum WD40 repeat p...   421   e-116
(P90587) RecName: Full=66 kDa stress protein; AltName: Full=p66;...   272   2e-71
BT045059_1(BT045059|pid:none) Salmo salar clone ssal-rgf-510-334...   226   1e-57
AK004858_1(AK004858|pid:none) Mus musculus adult male liver cDNA...   224   5e-57
AK004644_1(AK004644|pid:none) Mus musculus adult male lung cDNA,...   223   8e-57
BC049117_1(BC049117|pid:none) Mus musculus, WD repeat domain 1, ...   223   1e-56
AK165225_1(AK165225|pid:none) Mus musculus 6 days neonate spleen...   222   2e-56
(O75083) RecName: Full=WD repeat-containing protein 1; AltName: ...   222   2e-56
AY394939_1(AY394939|pid:none) Danio rerio clone RK046A1C09 WD re...   220   9e-56
AB084171_1(AB084171|pid:none) Cavia porcellus WDR1 mRNA for WD r...   219   1e-55

 psg: 0.90  gvh: 0.37  alm: 0.35  top: 0.63  tms: 0.00  mit: 0.32  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CFI189 is cyt

>CFI189F.Seq
ATTTTTATATTTATTTATTTATATAAATAAACTACACATTATAATGTCTGTAACTTTAAA
AAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATNNGTAGCAATTAATGGTGA
CCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTATTAGAAATGTAAA
GAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCACTGTTGCAAAGTA
TGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATTTACGTATTTGGGA
TACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGAATGGTGCAATCCT
TGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTGATGGTAAAGAGAG
ATTTGGTGCAGCCATCCTTTGGGATAGTGGTTCATCATGTGGTGAAATCACTGGTCACTC
AAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTCCATTCAGAGCCGCCACTGGTAG
TGAAGATTTTGCAGTCAATTGGTTCGAAGGTCNNNNNNNNNN

>CFI189Z.Seq
NNNNNNNNNNTGGTCCAGCTCACAAGAATCAAATTACCTCAATTAAAATCAATGGTGATC
AACTCATTACTTGCGCTATGGATGATAGTGTTAAAATCTCAAGTATCTCTAAAAAAACCT
ATGGTGAAAGTATTGGTGTAGATAGTCCAGCTCAAGCTGTTGCTTTCTCTGGTGATGTTG
TCGTTGCTGTCTCAATGAAAACCATTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAA
CTGCTGCCACTTGGGAACCAACCTCTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTG
GTAAAGATAACAAGATTCACGTTTTCACTCTCAGTGGTAACAATTTAACTGCCAGTCATA
CTTTAGATAATCATCGTGGTGCTATTACCGATCTTTCATACTCACCATGTGGTAAATATT
TAGCTTCAGGTTGTTCAAATCGTGAAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTA
AAGGTTGGGTTAACCATACCGCTCGTATTAATGCTGTCGCTTGGTCTAATGATTCTAAAT
TTGTTGCCTCTGCTTCACTCGATTCTCAAATTTACATTTGGAATGTTGAAAATCCAACCG
CTTCACCAGTTCAAGTTAAAAACTCTCATTTAGGTGGTGTCAATGATGTATTTAGGTTCA
AACAANAAATTTTCTCTGCAGGTA

>CFI189P.Seq
ATTTTTATATTTATTTATTTATATAAATAAACTACACATTATAATGTCTGTAACTTTAAA
AAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATNNGTAGCAATTAATGGTGA
CCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTATTAGAAATGTAAA
GAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCACTGTTGCAAAGTA
TGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATTTACGTATTTGGGA
TACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGAATGGTGCAATCCT
TGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTGATGGTAAAGAGAG
ATTTGGTGCAGCCATCCTTTGGGATAGTGGTTCATCATGTGGTGAAATCACTGGTCACTC
AAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTCCATTCAGAGCCGCCACTGGTAG
TGAAGATTTTGCAGTCAATTGGTTCGAAGGTC----------TGGTCCAGCTCACAAGAA
TCAAATTACCTCAATTAAAATCAATGGTGATCAACTCATTACTTGCGCTATGGATGATAG
TGTTAAAATCTCAAGTATCTCTAAAAAAACCTATGGTGAAAGTATTGGTGTAGATAGTCC
AGCTCAAGCTGTTGCTTTCTCTGGTGATGTTGTCGTTGCTGTCTCAATGAAAACCATTTA
TGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGGAACCAACCTCTGT
TGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGATTCACGTTTTCAC
TCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATCGTGGTGCTATTAC
CGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTTCAAATCGTGAAGT
TATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACCATACCGCTCGTAT
TAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTTCACTCGATTCTCA
AATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAGTTAAAAACTCTCA
TTTAGGTGGTGTCAATGATGTATTTAGGTTCAAACAANAAATTTTCTCTGCAGGTA