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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI179
Library CF
(Link to library)
Clone ID CFI179
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFI179 (CFI179Q) /CSM/CF/CFI1-D/CFI179Q.Seq.d/
TTTAATTNATAATAATAATAATAGTATAAATATATAAAGATTAATTTTTTTGTATATAAA
TTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCACACACATACATATAAA
TATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGATTTAGGTACAACATAT
TCATGTGTTGGTGTTTGGCAAAATGATCGNGTTGAAATTATTGCAAATGATCAAGGTAAT
AGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGTTTAATTGGTGATGCTGCA
AAGAATCAAGTTGCAATGAATCCXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence 
fnx*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGIDLGTTY
SCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN---
Translated Amino Acid sequence (All Frames) 
Frame A:
fnx*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGIDLGTTY
SCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN---


Frame B:
lixnnnnsini*rliflyinfck*ink**fff*fthihinik*lnikkchqlvli*vqhi
hvlvfgkmixlkllqmikvieplhlmlhlliqnv*lvmlqriklq*i---


Frame C:
*xiiiiiv*iykd*ffci*ifvnk*innnfffnshtyi*ilnn*ilknvinwy*frynif
mcwclak*sx*nyck*sr**nhsilcciy*yrtfnw*cckesscne---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ844 (CHJ844Q) /CSM/CH/CHJ8-B/CHJ844Q.Seq.d/                        440   e-123
CHJ874 (CHJ874Q) /CSM/CH/CHJ8-D/CHJ874Q.Seq.d/                        440   e-123
VHO443 (VHO443Q) /CSM/VH/VHO4-B/VHO443Q.Seq.d/                        440   e-123
VHN833 (VHN833Q) /CSM/VH/VHN8-B/VHN833Q.Seq.d/                        440   e-123
VHN678 (VHN678Q) /CSM/VH/VHN6-D/VHN678Q.Seq.d/                        440   e-123
VHM490 (VHM490Q) /CSM/VH/VHM4-D/VHM490Q.Seq.d/                        440   e-123
VHM349 (VHM349Q) /CSM/VH/VHM3-C/VHM349Q.Seq.d/                        440   e-123
VHL875 (VHL875Q) /CSM/VH/VHL8-D/VHL875Q.Seq.d/                        440   e-123
VHL628 (VHL628Q) /CSM/VH/VHL6-B/VHL628Q.Seq.d/                        440   e-123
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   400   e-108  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   196   5e-47  5
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   196   1e-46  1
AZ688003|AZ688003.1 ENTKF65TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   184   5e-43  1
BH166802|BH166802.1 ENTSR02TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   184   5e-43  1
AZ677966|AZ677966.1 ENTGJ83TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   184   5e-43  1
BH134599|BH134599.1 ENTNU80TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   184   5e-43  1
BH162382|BH162382.1 ENTPY86TFB Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   184   5e-43  1
BH155248|BH155248.1 ENTSO04TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   184   5e-43  1
AZ541415|AZ541415.1 ENTEX52TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   184   5e-43  1
dna update 2004. 2. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   125   6e-28
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   125   6e-28
(P25840) RecName: Full=Heat shock 70 kDa protein;  &FB790406_1(F...   120   1e-26
(P41753) RecName: Full=Heat shock 70 kDa protein;  &A53163(A5316...   120   2e-26
AF188289_1(AF188289|pid:none) Rhizopus stolonifer Hsp70 protein ...   120   2e-26
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   119   2e-26
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   119   2e-26
(Q01877) RecName: Full=Heat shock protein HSS1;  &U26597_1(U2659...   119   3e-26
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           119   3e-26
M26595_1(M26595|pid:none) T.cruzi heat shock protein (HSP70) gen...   119   4e-26
protein update 2009. 5.15
PSORT 

 psg: 0.87  gvh: 0.35  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFI179 is cyt
5' end seq. ID CFI179F
5' end seq. 
>CFI179F.Seq
TTTAATTNATAATAATAATAATAGTATAAATATATAAAGATTAATTTTTTTGTATATAAA
TTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCACACACATACATATAAA
TATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGATTTAGGTACAACATAT
TCATGTGTTGGTGTTTGGCAAAATGATCGNGTTGAAATTATTGCAAATGATCAAGGTAAT
AGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGTTTAATTGGTGATGCTGCA
AAGAATCAAGTTGCAATGAATCCNNNNNNNNNN
Length of 5' end seq. 333
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -