>CFI167 (CFI167Q) /CSM/CF/CFI1-C/CFI167Q.Seq.d/
XXXXXXXXXXACAAGTATTATTGAATGGTATTTGGAAACCTTATAAATTCAAAAGTTATA
TGCAATATAAATCAAGAGAACGTTTAAATTTACAAGCAGATACCCAATGTCCAGATGCAA
TACTATTGGATGACCAAACCAACCAAGAGGTATCATTATATGATTTATTTAATAGTAATA
ATAATGAAAAATCAGTGCAAGATAGACCAATGGTATTAATTTGTGGTAGTTTCACCTGAC
CCCCATTCCGCGACAAGATGTGTATGTTTCAAGACATCTTTGTCGATTTTAAAGAGTGGG
TTGATATTTATATTGTTTATTTGAAAGAGATACATCCAGCTGATGAATGGTATATTGGTG
GTGATGAAATTAGTCTATGTTATCGTCAACCTAAAACAATGGAAGATAGAAGGGAAATAA
TCAAAGATTTGAAAGAGTATGCTCCATTTTGTACAATTCCATTCTTAATTGATAAAATGG
ATAATAATTTCAATAAAGTTTATGACGCAGTTCCAGAAAGGTTATATGTTTTAGAAGATA
AAAAATTCAAATATGTTGGTGGTCCCGGCCCATTNGGTTTCATNCCTGAA

---qvllngiwkpykfksymqyksrerlnlqadtqcpdaillddqtnqevslydlfnsnn
neksvqdrpmvlicgsft*PPFRDKMCMFQDIFVDFKEWVDIYIVYLKEIHPADEWYIGG
DEISLCYRQPKTMEDRREIIKDLKEYAPFCTIPFLIDKMDNNFNKVYDAVPERLYVLEDK
KFKYVGGPGPXGFXPE

Frame A:
---qvllngiwkpykfksymqyksrerlnlqadtqcpdaillddqtnqevslydlfnsnn
neksvqdrpmvlicgsft*PPFRDKMCMFQDIFVDFKEWVDIYIVYLKEIHPADEWYIGG
DEISLCYRQPKTMEDRREIIKDLKEYAPFCTIPFLIDKMDNNFNKVYDAVPERLYVLEDK
KFKYVGGPGPXGFXPE


Frame B:
---kyy*mvfgnlinskvicninqenv*iykqipnvqmqyywmtkptkryhymiylivii
mknqckidqwy*fvvvspdphsatrcvcfktslsilksglifilfi*kryiqlmngilvv
mklvyvivnlkqwkiegk*ski*ksmlhfvqfhs*likwiiisikfmtqfqkgymf*kik
nsnmlvvpahxvsxl


Frame C:
---siiewyletl*iqklyai*ikrtfkftsrypmsrcntig*pnqprgiii*fi*****
*kisar*tnginlw*fhltpiprqdvyvsrhlcrf*rvg*ylyclferdtss**mvyww*
*n*smlsst*nngr*kgnnqrfervcsilynsiln**ng**fq*sl*rssrkvicfrr*k
iqicwwsrpixfhx*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI167 (CFI167Q) /CSM/CF/CFI1-C/CFI167Q.Seq.d/                       1138   0.0
CFG196 (CFG196Q) /CSM/CF/CFG1-D/CFG196Q.Seq.d/                       1005   0.0
SLA678 (SLA678Q) /CSM/SL/SLA6-D/SLA678Q.Seq.d/                        944   0.0
SSC369 (SSC369Q) /CSM/SS/SSC3-C/SSC369Q.Seq.d/                         42   0.009
SHK355 (SHK355Q) /CSM/SH/SHK3-C/SHK355Q.Seq.d/                         42   0.009
CHK476 (CHK476Q) /CSM/CH/CHK4-D/CHK476Q.Seq.d/                         42   0.009
CHI166 (CHI166Q) /CSM/CH/CHI1-C/CHI166Q.Seq.d/                         42   0.009
VHM868 (VHM868Q) /CSM/VH/VHM8-C/VHM868Q.Seq.d/                         40   0.037
VHL895 (VHL895Q) /CSM/VH/VHL8-D/VHL895Q.Seq.d/                         40   0.037
VHJ258 (VHJ258Q) /CSM/VH/VHJ2-C/VHJ258Q.Seq.d/                         40   0.037

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.  1130   0.0    8
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   7e-07  12
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   5e-06  16
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    36   1e-05  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   1e-05  14
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    38   2e-05  8
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   3e-05  19
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    34   2e-04  11
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    32   2e-04  12
AC124958|AC124958.11 Medicago truncatula clone mth2-18i11, complete sequence.    42   5e-04  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_13(AC115598|pid:none) Dictyostelium discoideum chromoso...   294   1e-78
AY533208_1(AY533208|pid:none) Sus scrofa type III iodothyronine ...    79   9e-14
AY656759_1(AY656759|pid:none) Ovis aries type 3 iodothyronine de...    79   1e-13
AY858552_1(AY858552|pid:none) Bos taurus type III iodothyronine ...    79   1e-13
(Q6DN07) RecName: Full=Type III iodothyronine deiodinase;       ...    79   1e-13
(Q2QEI3) RecName: Full=Type I iodothyronine deiodinase;         ...    78   2e-13
(P55073) RecName: Full=Type III iodothyronine deiodinase;       ...    78   2e-13
DQ098656_1(DQ098656|pid:none) Xenopus laevis type I iodothyronin...    78   2e-13
BC017717_1(BC017717|pid:none) Homo sapiens deiodinase, iodothyro...    78   2e-13
Y11273_1(Y11273|pid:none) G.gallus mRNA for iodothyronine deiodi...    77   3e-13

 psg: 0.82  gvh: 0.30  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for CFI167 is nuc

>CFI167Z.Seq
NNNNNNNNNNACAAGTATTATTGAATGGTATTTGGAAACCTTATAAATTCAAAAGTTATA
TGCAATATAAATCAAGAGAACGTTTAAATTTACAAGCAGATACCCAATGTCCAGATGCAA
TACTATTGGATGACCAAACCAACCAAGAGGTATCATTATATGATTTATTTAATAGTAATA
ATAATGAAAAATCAGTGCAAGATAGACCAATGGTATTAATTTGTGGTAGTTTCACCTGAC
CCCCATTCCGCGACAAGATGTGTATGTTTCAAGACATCTTTGTCGATTTTAAAGAGTGGG
TTGATATTTATATTGTTTATTTGAAAGAGATACATCCAGCTGATGAATGGTATATTGGTG
GTGATGAAATTAGTCTATGTTATCGTCAACCTAAAACAATGGAAGATAGAAGGGAAATAA
TCAAAGATTTGAAAGAGTATGCTCCATTTTGTACAATTCCATTCTTAATTGATAAAATGG
ATAATAATTTCAATAAAGTTTATGACGCAGTTCCAGAAAGGTTATATGTTTTAGAAGATA
AAAAATTCAAATATGTTGGTGGTCCCGGCCCATTNGGTTTCATNCCTGAA