>CFI159 (CFI159Q) /CSM/CF/CFI1-C/CFI159Q.Seq.d/
ATATTCTTTTTCTTTTGTAATACTTTGGTTATAAGAAAAGATATCACAATAAAAAAAAAA
ACNCAAAAAAAAAAAAACCCCAAAAAAAACCAAAAAAAAAAXXXXXXXXXX

IFFFFCNTLVIRKDITIKKKTQKKKNPKKNQKK---

Frame A:
IFFFFCNTLVIRKDITIKKKTQKKKNPKKNQKK---


Frame B:
ysfsfvilwl*ekisq*kkkxkkkktpkktkkk---


Frame C:
ilfll*yfgykkryhnkkknxkkkkpqkkpkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI362 (VHI362Q) /CSM/VH/VHI3-C/VHI362Q.Seq.d/                        100   8e-21
SHF108 (SHF108Q) /CSM/SH/SHF1-A/SHF108Q.Seq.d/                        100   8e-21
CHR264 (CHR264Q) /CSM/CH/CHR2-C/CHR264Q.Seq.d/                        100   8e-21
CHQ891 (CHQ891Q) /CSM/CH/CHQ8-D/CHQ891Q.Seq.d/                        100   8e-21
CFI159 (CFI159Q) /CSM/CF/CFI1-C/CFI159Q.Seq.d/                        100   8e-21
VSE538 (VSE538Q) /CSM/VS/VSE5-B/VSE538Q.Seq.d/                         34   0.38
VSE534 (VSE534Q) /CSM/VS/VSE5-B/VSE534Q.Seq.d/                         34   0.38
VSB284 (VSB284Q) /CSM/VS/VSB2-D/VSB284Q.Seq.d/                         34   0.38
VSA843 (VSA843Q) /CSM/VS/VSA8-B/VSA843Q.Seq.d/                         34   0.38
VSA516 (VSA516Q) /CSM/VS/VSA5-A/VSA516Q.Seq.d/                         34   0.38

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC139445|AC139445.5 Rattus norvegicus clone CH230-244I5, WORKING DRAFT SEQUENCE, 66 unordered pieces.    40   7e-04  3
AC009137|AC009137.8 Homo sapiens chromosome 16 clone RP11-521L9, complete sequence.    48   0.022  1
AC009027|AC009027.10 Homo sapiens chromosome 16 clone RP11-123C5, complete sequence.    48   0.022  1
AB100260|AB100260.1 Magnaporthe grisea gene for putative immunoreactive protein, complete cds.    36   0.054  3
AP001870|AP001870.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2206F6.    44   0.35   1
AC025852|AC025852.3 Homo sapiens chromosome 4 clone RP11-680D22 map 4, WORKING DRAFT SEQUENCE, 33 unordered pieces.    44   0.35   1
AP002334|AP002334.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2168P8, WORKING DRAFT SEQUENCE, unordered pieces.    44   0.35   1
AC018743|AC018743.27 Homo sapiens chromosome 12 clone RP11-289M22, WORKING DRAFT SEQUENCE, 30 unordered pieces.    36   0.46   5
AC020837|AC020837.2 Mus musculus clone CT7-596D20, WORKING DRAFT SEQUENCE, 36 unordered pieces.    40   0.75   3
AC015427|AC015427.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    40   0.99   2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 61,396,829

 psg: 0.92  gvh: 0.35  alm: 0.39  top: 0.93  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.31  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFI159 is nuc

>CFI159F.Seq
ATATTCTTTTTCTTTTGTAATACTTTGGTTATAAGAAAAGATATCACAATAAAAAAAAAA
ACNCAAAAAAAAAAAAACCCCAAAAAAAACCAAAAAAAAAANNNNNNNNNN