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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI153
Library CF
(Link to library)
Clone ID CFI153
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14176-1
Original site URL
Representative seq. ID CFI153P
(Link to Original site)
Representative DNA sequence 
>CFI153 (CFI153Q) /CSM/CF/CFI1-C/CFI153Q.Seq.d/
AAAAACTCAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATC
CGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAA
ATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAA
ACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGAC
CCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACA
GCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACA
CCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTC
AGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTA
AATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAXXXXXXXXXXTGTTGTTGCATCA
ATTANTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGAT
GAAGAACATATGNTTTCATTANNACTTAAAGTTGGAGCTGNAGCTGTCAAAGCANNAGCA
AATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTT
GTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCA
AAGTGATATGATCTCTCNGCAAGCTTCCNATTTAATGAAAGCAGCCGAAGAAAATAGTAC
AGTTTCACCAATCGTANATAAAGTTTCAAGTTTTGGTNCTTTTATT
sequence update 2001.11.22
Translated Amino Acid sequence 
knsnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTK
TVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFT
PELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERS---

---VVASIXAAGYSVGQDAAIKARQVDEEHMXSLXLKVGAXAVKAXANEIDNNLHISESA
AAIKGAVVERANALDERFQISGFFKSAK*ydlsasfxfnessrrk*ysftnrx*sfkfwx
fy
Translated Amino Acid sequence (All Frames) 
Frame A:
knsnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTK
TVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFT
PELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERS---

---cccinxcsrl*cwtrrch*stss**rtyxfixt*swsxscqsxsk*n***pshf*ec
rch*gcscreskctr*kipnlrfl*eckvi*slxklpi**kqpkkivqfhqsxikfqvlv
ll

Frame B:
ktqtthtytiyllf*iisksdnnnnnnnnnpffnihinik**iqisqfmfqifh*kqilk
qfqifshfveelliyf*emtqlvvhnkq**ylnqiqlqkqlyy*qmh*l*ik*fklfnlh
qn*sli*hnnflnnnnliisvvnnnhnnnnmlvnhkktl*ienivcqimkev---

---VVASIXAAGYSVGQDAAIKARQVDEEHMXSLXLKVGAXAVKAXANEIDNNLHISESA
AAIKGAVVERANALDERFQISGFFKSAK*ydlsasfxfnessrrk*ysftnrx*sfkfwx
fy

Frame C:
klkqhtltqyiyyfklylnptttititttthsliyi*i*nnesrfhslcfkyfiesky*n
sfrfflilwknc*fifkk*pnw*fttsnssi*irfscknsfiinkcincr*snsscsiyt
rirv*fnttifsttti**sqw*tttttttic*sttrrhck*rt*car**kk---

---llhqlxqqvivldktlplkhvklmknixfhxxlklelxlskxxqmkliitftflrvp
lplrvql*reqmhsmkdsksqvslrvqsdmisxqasxlmkaaeenstvspivxkvssfgx
fi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI153 (CFI153Q) /CSM/CF/CFI1-C/CFI153Q.Seq.d/                        739   0.0
VFL325 (VFL325Q) /CSM/VF/VFL3-B/VFL325Q.Seq.d/                        714   0.0
SFC194 (SFC194Q) /CSM/SF/SFC1-D/SFC194Q.Seq.d/                        708   0.0
VSB202 (VSB202Q) /CSM/VS/VSB2-A/VSB202Q.Seq.d/                        706   0.0
VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/                        706   0.0
VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/                        706   0.0
VFJ841 (VFJ841Q) /CSM/VF/VFJ8-B/VFJ841Q.Seq.d/                        706   0.0
VFJ755 (VFJ755Q) /CSM/VF/VFJ7-C/VFJ755Q.Seq.d/                        706   0.0
VFG496 (VFG496Q) /CSM/VF/VFG4-D/VFG496Q.Seq.d/                        706   0.0
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/                        706   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    46   7e-05  11
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    40   5e-04  12
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   6e-04  12
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38   0.001  10
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    30   0.002  14
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   0.002  16
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    34   0.004  14
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    36   0.005  11
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence.    32   0.005  14
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    38   0.005  11
dna update 2004. 2. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU958085_1(EU958085|pid:none) Zea mays clone 1672545 RNA-binding...    55   2e-06
AC091811_13(AC091811|pid:none) Oryza sativa chromosome 3 BAC OSJ...    54   5e-06
BT068289_1(BT068289|pid:none) Zea mays full-length cDNA clone ZM...    54   9e-06
BT061154_1(BT061154|pid:none) Zea mays full-length cDNA clone ZM...    54   9e-06
AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ...    53   1e-05
CR855144_15(CR855144|pid:none) Oryza sativa (indica cultivar-gro...    52   2e-05
BT062058_1(BT062058|pid:none) Zea mays full-length cDNA clone ZM...    52   3e-05
AK061483_1(AK061483|pid:none) Oryza sativa Japonica Group cDNA c...    52   3e-05
AP008212_69(AP008212|pid:none) Oryza sativa (japonica cultivar-g...    52   3e-05
EU962087_1(EU962087|pid:none) Zea mays clone 240116 RNA recognit...    52   3e-05
protein update 2009. 5.15
PSORT 

 psg: 0.84  gvh: 0.45  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for CFI153 is cyt
5' end seq. ID CFI153F
5' end seq. 
>CFI153F.Seq
AAAAACTCAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATC
CGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAA
ATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAA
ACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGAC
CCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACA
GCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACA
CCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTC
AGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTA
AATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTANNNNNNNNNN
Length of 5' end seq. 527
3' end seq. ID CFI153Z
3' end seq. 
>CFI153Z.Seq
NNNNNNNNNNTGTTGTTGCATCAATTANTGCAGCAGGTTATAGTGTTGGACAAGACGCTG
CCATTAAAGCACGTCAAGTTGATGAAGAACATATGNTTTCATTANNACTTAAAGTTGGAG
CTGNAGCTGTCAAAGCANNAGCAAATGAAATTGATAATAACCTTCACATTTCTGAGAGTG
CCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAA
TCTCAGGTTTCTTTAAGAGTGCAAAGTGATATGATCTCTCNGCAAGCTTCCNATTTAATG
AAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTANATAAAGTTTCAAGTTTTGGT
NCTTTTATT
Length of 3' end seq. 369
Connected seq. ID CFI153P
Connected seq. 
>CFI153P.Seq
AAAAACTCAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATC
CGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAA
ATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAA
ACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGAC
CCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACA
GCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACA
CCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTC
AGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTA
AATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTA----------TGTTGTTGCATCA
ATTANTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGAT
GAAGAACATATGNTTTCATTANNACTTAAAGTTGGAGCTGNAGCTGTCAAAGCANNAGCA
AATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTT
GTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCA
AAGTGATATGATCTCTCNGCAAGCTTCCNATTTAATGAAAGCAGCCGAAGAAAATAGTAC
AGTTTCACCAATCGTANATAAAGTTTCAAGTTTTGGTNCTTTTATT
Length of connected seq. 876
Full length Seq ID -
Full length Seq. -
Length of full length seq. -