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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI106
Library CF
(Link to library)
Clone ID CFI106
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16501-1
Original site URL
Representative seq. ID CFI106P
(Link to Original site)
Representative DNA sequence 
>CFI106 (CFI106Q) /CSM/CF/CFI1-A/CFI106Q.Seq.d/
AAAGATAGTTGAACATGCAAATTACAGAAAAAGAAACAGTACAAGAAGAACAACAAAAAT
TACTATATCCACCACCTTCTTTTAGTACAAAATGTCATATATCATCAGTAGAACAATATA
ATGAAATGTATAAAGAAAGTATTGAATCACCAAATCAATTTTGGGATAAAAAAGCTAAAG
AATTTTTAACTTGGTTTTCTGATTATACAACTGTTCAACATGGATCATTCGAAAAAGGTG
ATATTTCATGGTTTTTAAATGGTAAAATTAATGTTTCATATAATTGTATCGATAGACATT
TAAAAGAGAATGCAGATAAAGTTGCAATACTATTTGAAGGTGATGAAGAAACAATGGTTA
AAAAAGTTACATATAGAGAGATGTTTGAAGAGGTTTGTAGATTATCAAATCTTTTGATAT
CACTTGGCGTTGGTAAAGGAGATACGGTAGCGATCTATCTACCAAACACACCAACCGCCA
TTTATTCAATGTTAGCATGCGCTAGAATTGGAGCAATTCATTCAGTTATTTTTGCAGGAT
TTGGTTAXXXXXXXXXXCAGGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCT
TCAAACTTATATGACTCAATATAAAGGTCACTATTTCACTGGTGATGGTGTAAAACTTGA
CTCTGATGGTTATTATTGGATCGAAGGTAGAGTAGATGATGTTATCAATGTTAGTGGTCA
TAGATTAGGTACTGCTGAATTAGAGAGTGCCCTCGTTGGTTGTTCAATTTGTGCAGAGGC
TGCCGTTGTTGGTTATCCTCATGATATCAAAGGTCAAGGTATTTTAGCATTTTGTACACT
CAAAGAAGGTTATCAAGAGGATGAATCAAATGTTATTATGATGTTAAAAAAAGAAGTTAG
AAATGTAATTGGTCCATTTGCAACACCTGATGTAATTGTTATAACACCTTCACTTCCAAA
AACTCGTAGTGGTAAAATTATGAGAAGAATTCTTAGAAAAATTGGTTGTCATGAATCTTC
TGCTGAACAATTAGGNGATATTTCAACTTTAGCTGAACCTGAAGTTGTCAAACTTTTATT
AAAAAGTTTCAAAAGNATTCCAAAAACTCATNAAAAAATAAAAAAAAAAAAAATAATTCA
G
sequence update 2001.11.22
Translated Amino Acid sequence 
r*LNMQITEKETVQEEQQKLLYPPPSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKE
FLTWFSDYTTVQHGSFEKGDISWFLNGKINVSYNCIDRHLKENADKVAILFEGDEETMVK
KVTYREMFEEVCRLSNLLISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGF
G---

---GIARSVYRSHGRYLQTYMTQYKGHYFTGDGVKLDSDGYYWIEGRVDDVINVSGHRLG
TAELESALVGCSICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMMLKKEVRNVI
GPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHESSAEQLGDISTLAEPEVVKLLLKSF
KXIPKTHXKIKKKKIIQ
Translated Amino Acid sequence (All Frames) 
Frame A:
kds*tcklqkkkqykknnknyyihhlllvqnviyhq*nnimkcikkvlnhqinfgikklk
nf*lgfliiqlfnmdhskkvifhgf*mvklmfhiivsidi*krmqiklqyylkvmkkqwl
kklhierclkrfvdyqif*yhlalvkeir*rsiyqthqppfiqc*haleleqfiqlflqd
lv---

---qvllvqfivlmvvifkli*lnikvtislvmv*nltlmviigskve*mmlsmlvvid*
vlln*rvpslvvqfvqrlpllvilmiskvkvf*hfvhskkvikrmnqmll*c*kkklem*
lvhlqhlm*ll*hlhfqklvvvkl*eefleklvvmnlllnn*xifql*lnlklsnfy*kv
skxfqklxkk*kkkk*f

Frame B:
kivehanyrkrnstrrttkitisttff*ykmsyiisrti**nv*rky*itksilg*ks*r
ifnlvf*lyncstwiirkr*yfmvfkw*n*cfi*lyr*tfkrecr*scnti*r**rnng*
ksyi*rdv*rgl*iiksfditwrw*rrygsdlstkhtnrhlfnvsmr*nwsnsfsyfcri
wl---

---rycsfslsfswslssnlydsi*rslfhw*wckt*l*wllldrr*sr*cyqc*ws*ir
yc*irecprwlfnlcrgcrcwlss*yqrsryfsilytqrrlsrg*ikcyydvkkrs*kcn
wsicnt*cncyntftskns*w*nyekns*knwls*ifc*tirxyfnfs*t*scqtfikkf
qkxsknsxknkkkknns

Frame C:
r*LNMQITEKETVQEEQQKLLYPPPSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKE
FLTWFSDYTTVQHGSFEKGDISWFLNGKINVSYNCIDRHLKENADKVAILFEGDEETMVK
KVTYREMFEEVCRLSNLLISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGF
G---

---GIARSVYRSHGRYLQTYMTQYKGHYFTGDGVKLDSDGYYWIEGRVDDVINVSGHRLG
TAELESALVGCSICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMMLKKEVRNVI
GPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHESSAEQLGDISTLAEPEVVKLLLKSF
KXIPKTHXKIKKKKIIQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI106 (CFI106Q) /CSM/CF/CFI1-A/CFI106Q.Seq.d/                       2089   0.0
CFH854 (CFH854Q) /CSM/CF/CFH8-C/CFH854Q.Seq.d/                       1084   0.0
VHJ869 (VHJ869Q) /CSM/VH/VHJ8-C/VHJ869Q.Seq.d/                       1082   0.0
VHE880 (VHE880Q) /CSM/VH/VHE8-D/VHE880Q.Seq.d/                       1082   0.0
VHE704 (VHE704Q) /CSM/VH/VHE7-A/VHE704Q.Seq.d/                       1082   0.0
AFE757 (AFE757Q) /CSM/AF/AFE7-C/AFE757Q.Seq.d/                       1082   0.0
VHO673 (VHO673Q) /CSM/VH/VHO6-D/VHO673Q.Seq.d/                       1074   0.0
VHD191 (VHD191Q) /CSM/VH/VHD1-D/VHD191Q.Seq.d/                       1065   0.0
SFB864 (SFB864Q) /CSM/SF/SFB8-C/SFB864Q.Seq.d/                       1057   0.0
SFF249 (SFF249Q) /CSM/SF/SFF2-C/SFF249Q.Seq.d/                       1019   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   650   0.0    9
AX489103|AX489103.1 Sequence 6403 from Patent WO02053728.          70   1e-19  5
AZ930496|AZ930496.1 474.dhz54h09.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz54h09.s1, DNA sequence.    72   3e-14  2
CD978883|CD978883.1 QAF6c12.yg QAF Zea mays cDNA clone QAF6c12, mRNA sequence.    42   9e-13  4
AW037040|AW037040.1 614025A12.y1 614 - root cDNA library from Walbot Lab Zea mays cDNA, mRNA sequence.    42   3e-12  4
BI674812|BI674812.1 949067E10.y2 949 - Juvenile leaf and shoot cDNA from Steve Moose Zea mays cDNA, mRNA sequence.    42   6e-12  4
CA269673|CA269673.1 SCMCRT3083F09.g RT3 Saccharum officinarum cDNA clone SCMCRT3083F09 5', mRNA sequence.    42   1e-11  4
CA258874|CA258874.1 SCBGRT3013E01.g RT3 Saccharum officinarum cDNA clone SCBGRT3013E01 5', mRNA sequence.    42   1e-11  4
CF635493|CF635493.1 zmrww00_0A20-011-b10.s2 zmrww00 Zea mays cDNA, mRNA sequence.    42   2e-11  4
BI478599|BI478599.1 949067E10.x1 949 - Juvenile leaf and shoot cDNA from Steve Moose Zea mays cDNA, mRNA sequence.    42   1e-10  4
dna update 2004. 2. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115612_37(AC115612|pid:none) Dictyostelium discoideum chromoso...   352   1e-95
(Q54Z60) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   352   1e-95
CP000158_1385(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...   213   7e-54
CP000927_111(CP000927|pid:none) Caulobacter sp. K31, complete ge...   211   4e-53
(Q6MNF1) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   210   8e-53
DQ782753_1(DQ782753|pid:none) Polytomella parva plastid acetyl C...   209   2e-52
(A1U2S9) RecName: Full=Acetyl-coenzyme A synthetase;          EC...   209   2e-52
CP000478_739(CP000478|pid:none) Syntrophobacter fumaroxidans MPO...   207   4e-52
CP000157_932(CP000157|pid:none) Erythrobacter litoralis HTCC2594...   207   7e-52
CP001322_2312(CP001322|pid:none) Desulfatibacillum alkenivorans ...   207   7e-52
protein update 2009. 5.15
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CFI106 is cyt
5' end seq. ID CFI106F
5' end seq. 
>CFI106F.Seq
AAAGATAGTTGAACATGCAAATTACAGAAAAAGAAACAGTACAAGAAGAACAACAAAAAT
TACTATATCCACCACCTTCTTTTAGTACAAAATGTCATATATCATCAGTAGAACAATATA
ATGAAATGTATAAAGAAAGTATTGAATCACCAAATCAATTTTGGGATAAAAAAGCTAAAG
AATTTTTAACTTGGTTTTCTGATTATACAACTGTTCAACATGGATCATTCGAAAAAGGTG
ATATTTCATGGTTTTTAAATGGTAAAATTAATGTTTCATATAATTGTATCGATAGACATT
TAAAAGAGAATGCAGATAAAGTTGCAATACTATTTGAAGGTGATGAAGAAACAATGGTTA
AAAAAGTTACATATAGAGAGATGTTTGAAGAGGTTTGTAGATTATCAAATCTTTTGATAT
CACTTGGCGTTGGTAAAGGAGATACGGTAGCGATCTATCTACCAAACACACCAACCGCCA
TTTATTCAATGTTAGCATGCGCTAGAATTGGAGCAATTCATTCAGTTATTTTTGCAGGAT
TTGGTTANNNNNNNNNN
Length of 5' end seq. 557
3' end seq. ID CFI106Z
3' end seq. 
>CFI106Z.Seq
NNNNNNNNNNCAGGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCTTCAAACT
TATATGACTCAATATAAAGGTCACTATTTCACTGGTGATGGTGTAAAACTTGACTCTGAT
GGTTATTATTGGATCGAAGGTAGAGTAGATGATGTTATCAATGTTAGTGGTCATAGATTA
GGTACTGCTGAATTAGAGAGTGCCCTCGTTGGTTGTTCAATTTGTGCAGAGGCTGCCGTT
GTTGGTTATCCTCATGATATCAAAGGTCAAGGTATTTTAGCATTTTGTACACTCAAAGAA
GGTTATCAAGAGGATGAATCAAATGTTATTATGATGTTAAAAAAAGAAGTTAGAAATGTA
ATTGGTCCATTTGCAACACCTGATGTAATTGTTATAACACCTTCACTTCCAAAAACTCGT
AGTGGTAAAATTATGAGAAGAATTCTTAGAAAAATTGGTTGTCATGAATCTTCTGCTGAA
CAATTAGGNGATATTTCAACTTTAGCTGAACCTGAAGTTGTCAAACTTTTATTAAAAAGT
TTCAAAAGNATTCCAAAAACTCATNAAAAAATAAAAAAAAAAAAAATAATTCAG
Length of 3' end seq. 594
Connected seq. ID CFI106P
Connected seq. 
>CFI106P.Seq
AAAGATAGTTGAACATGCAAATTACAGAAAAAGAAACAGTACAAGAAGAACAACAAAAAT
TACTATATCCACCACCTTCTTTTAGTACAAAATGTCATATATCATCAGTAGAACAATATA
ATGAAATGTATAAAGAAAGTATTGAATCACCAAATCAATTTTGGGATAAAAAAGCTAAAG
AATTTTTAACTTGGTTTTCTGATTATACAACTGTTCAACATGGATCATTCGAAAAAGGTG
ATATTTCATGGTTTTTAAATGGTAAAATTAATGTTTCATATAATTGTATCGATAGACATT
TAAAAGAGAATGCAGATAAAGTTGCAATACTATTTGAAGGTGATGAAGAAACAATGGTTA
AAAAAGTTACATATAGAGAGATGTTTGAAGAGGTTTGTAGATTATCAAATCTTTTGATAT
CACTTGGCGTTGGTAAAGGAGATACGGTAGCGATCTATCTACCAAACACACCAACCGCCA
TTTATTCAATGTTAGCATGCGCTAGAATTGGAGCAATTCATTCAGTTATTTTTGCAGGAT
TTGGTTA----------CAGGTATTGCTCGTTCAGTTTATCGTTCTCATGGTCGTTATCT
TCAAACTTATATGACTCAATATAAAGGTCACTATTTCACTGGTGATGGTGTAAAACTTGA
CTCTGATGGTTATTATTGGATCGAAGGTAGAGTAGATGATGTTATCAATGTTAGTGGTCA
TAGATTAGGTACTGCTGAATTAGAGAGTGCCCTCGTTGGTTGTTCAATTTGTGCAGAGGC
TGCCGTTGTTGGTTATCCTCATGATATCAAAGGTCAAGGTATTTTAGCATTTTGTACACT
CAAAGAAGGTTATCAAGAGGATGAATCAAATGTTATTATGATGTTAAAAAAAGAAGTTAG
AAATGTAATTGGTCCATTTGCAACACCTGATGTAATTGTTATAACACCTTCACTTCCAAA
AACTCGTAGTGGTAAAATTATGAGAAGAATTCTTAGAAAAATTGGTTGTCATGAATCTTC
TGCTGAACAATTAGGNGATATTTCAACTTTAGCTGAACCTGAAGTTGTCAAACTTTTATT
AAAAAGTTTCAAAAGNATTCCAAAAACTCATNAAAAAATAAAAAAAAAAAAAATAATTCA
G
Length of connected seq. 1131
Full length Seq ID -
Full length Seq. -
Length of full length seq. -