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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFI104
Library CF
(Link to library)
Clone ID CFI104
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFI104P
(Link to Original site)
Representative DNA sequence 
>CFI104 (CFI104Q) /CSM/CF/CFI1-A/CFI104Q.Seq.d/
ATAAAAGACTTTGAAAATAACAATCAAATCAATTATAACAATTATTAAAAACAAAAAGAT
ATTTTGTTTTTTCTTGTTTTCTTTATTCACATTACTATTTCAATTTAATTTTTTACAACC
ATCGTCATCAATAAAATCAAAATTGGAATTTAAATCACCAATTGAAATTAAGATGATGAA
GCCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATC
ATCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGC
ACCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATT
GTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACC
ACCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTC
AGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGG
TTGTACTGGTCXXXXXXXXXXCTAAATTATTGGAGATTGCACAAGTACCATCATCAAAGG
TTGAAGAATTTAAATCAATAAAGAAATTCAAAATTTTTAATACCAATAACATTTGGGTCA
ATCTCAAAGCAATGGATCGTATTTTGAAACAAAATCTTTTGGATGATATGGATATCATTA
TCAATCCAAAGGTTGCTGATGGTAAAAATATCATTCAATTGGAGATTGCTGCTGGTGCTG
CAATTGAATTCTTTAACAATGCAAGAGGTGTCAATGTACCAAGATCAAGATTTTTACCAG
TGAAATCAACCTCTGATCTCTTTATCGTTCAATCAAATCTCTACTCACTCGAGAAGGGTG
TTTTGGTAATGAACAAGAATAGACCATTCACCACAGTTCCCTTGGTTAAATTGGGTGATA
ACTTTAAAAAGGTTTCAGATTATCAAGCTCGTATCAAAGGTATTCCAGATATTTTGGAAT
TGGATCAACTCACCGTTTCTGGTGATATAACCTTTGGTCCAAATATGGTCCTCAAAGGCA
CTGTTATCATTGTTGCTAATCAGGTTCAAGAATTATATTCCNAAGGTTCAGAATTNAAAA
TAAAGAGTTAGGGNATTTACATTG
sequence update 2001.11.22
Translated Amino Acid sequence 
*KTLKITIKSIITIIKNKKIFCFFLFSLFTLLFQFNFLQPSSSIKSKLEFKSPIEIKMMK
PDLNSPLPQSPQLQSFGSRSSDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKL
FTRFLKNRKKVIDWDKINPPPADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMG
CTG---

---KLLEIAQVPSSKVEEFKSIKKFKIFNTNNIWVNLKAMDRILKQNLLDDMDIIINPKV
ADGKNIIQLEIAAGAAIEFFNNARGVNVPRSRFLPVKSTSDLFIVQSNLYSLEKGVLVMN
KNRPFTTVPLVKLGDNFKKVSDYQARIKGIPDILELDQLTVSGDITFGPNMVLKGTVIIV
ANQVQELYSXGSEXKIKS*giyi
Translated Amino Acid sequence (All Frames) 
Frame A:
ikdfennnqinynny*kqkdilfflvffihitisi*ffttivinkikigi*itn*n*dde
arfk*sittitttsiiwk*iirscnrgfifeeigsnltnctk*nske*ifkqrntiyqqi
vypflke*kesnrlg*nqstts*ygfkl*rftsnh*tknfrtrfkigcfeikwrfrynng
lyw---

---lnywrlhkyhhqrlknlnq*rnskflipitfgsiskqwivf*nkifwmiwislsiqr
llmvkisfnwrlllvlqlnsltmqevsmyqdqdfyq*nqplislsfnqisthsrrvfw**
tridhspqfpwlnwvitlkrfqiiklvskvfqifwnwinspflvi*plvqiwsskallsl
llirfknyipkvqnxk*rvrxftl

Frame B:
*KTLKITIKSIITIIKNKKIFCFFLFSLFTLLFQFNFLQPSSSIKSKLEFKSPIEIKMMK
PDLNSPLPQSPQLQSFGSRSSDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSINKL
FTRFLKNRKKVIDWDKINPPPADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTTMG
CTG---

---*iigdctstiikg*ri*inkeiqnf*yq*hlgqsqsngsyfetksfg*ygyhyqskg
c*w*kyhsigdccwccn*il*qckrcqctkikiftseinl*slyrsikslltregcfgne
qe*tihhsslg*ig**l*kgfrlsssyqrysryfgigsthrfw*ynlwskygpqrhcyhc
c*sgsriifxrfrixnkelgxlh

Frame C:
krl*k*qsnql*qllktkryfvfscflyshyyfnlifynhrhq*nqnwnlnhqlklr**s
qi*ivhyhnhhnfnhlevdhqilqpriyf*rnwkqshklhqmkq*rmnf*tkkyhlstnc
lpvs*rierk*sigiksihhqliwf*tikiyqqslnkelqnslqnwlf*n*mev*vqqwv
vlv---

---KLLEIAQVPSSKVEEFKSIKKFKIFNTNNIWVNLKAMDRILKQNLLDDMDIIINPKV
ADGKNIIQLEIAAGAAIEFFNNARGVNVPRSRFLPVKSTSDLFIVQSNLYSLEKGVLVMN
KNRPFTTVPLVKLGDNFKKVSDYQARIKGIPDILELDQLTVSGDITFGPNMVLKGTVIIV
ANQVQELYSXGSEXKIKS*giyi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFI104 (CFI104Q) /CSM/CF/CFI1-A/CFI104Q.Seq.d/                       2004   0.0
SFE708 (SFE708Q) /CSM/SF/SFE7-A/SFE708Q.Seq.d/                       1172   0.0
SFJ475 (SFJ475Q) /CSM/SF/SFJ4-D/SFJ475Q.Seq.d/                       1150   0.0
SFI134 (SFI134Q) /CSM/SF/SFI1-B/SFI134Q.Seq.d/                       1150   0.0
SFG824 (SFG824Q) /CSM/SF/SFG8-A/SFG824Q.Seq.d/                       1150   0.0
SFD859 (SFD859Q) /CSM/SF/SFD8-C/SFD859Q.Seq.d/                       1150   0.0
AFH891 (AFH891Q) /CSM/AF/AFH8-D/AFH891Q.Seq.d/                       1148   0.0
SFI168 (SFI168Q) /CSM/SF/SFI1-C/SFI168Q.Seq.d/                       1142   0.0
SFL171 (SFL171Q) /CSM/SF/SFL1-C/SFL171Q.Seq.d/                       1140   0.0
CFB811 (CFB811Q) /CSM/CF/CFB8-A/CFB811Q.Seq.d/                       1140   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.  1072   0.0    1
L28007|L28007.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase (UDPGP2) gene, partial cds.   254   6e-68  2
AX489345|AX489345.1 Sequence 6645 from Patent WO02053728.          52   5e-13  4
BM437904|BM437904.1 VVA027D07_55303 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVA027D07 5, mRNA sequence.    50   2e-05  2
CB971834|CB971834.1 CAB10006_IIIa_Fa_E02 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10006_IIIa_Fa_E02 5', mRNA sequence.    50   3e-05  2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    32   5e-05  13
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    38   1e-04  24
AY082621|AY082621.1 Solanum tuberosum Redsen UTP:alpha-D-glucose-1-phosphate uridylyltransferase mRNA, complete cds.    42   2e-04  3
AY082620|AY082620.1 Solanum tuberosum Norchip UTP:alpha-D-glucose-1-phosphate uridylyltransferase mRNA, complete cds.    42   2e-04  3
AY082622|AY082622.1 Solanum tuberosum BelRus UTP:alpha-D-glucose-1-phosphate uridylyltransferase mRNA, complete cds.    42   2e-04  3
dna update 2004. 2. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   300   5e-80
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   192   1e-47
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro...   192   1e-47
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   192   1e-47
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   192   2e-47
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   192   2e-47
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...   192   2e-47
AF534111_1(AF534111|pid:none) Gallus gallus UDP-glucose pyrophos...   190   7e-47
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   189   1e-46
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...   189   1e-46
protein update 2009. 5.15
PSORT 

 psg: 0.76  gvh: 0.65  alm: 0.30  top: 0.33  tms: 0.07  mit: 0.44  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for CFI104 is mit
5' end seq. ID CFI104F
5' end seq. 
>CFI104F.Seq
ATAAAAGACTTTGAAAATAACAATCAAATCAATTATAACAATTATTAAAAACAAAAAGAT
ATTTTGTTTTTTCTTGTTTTCTTTATTCACATTACTATTTCAATTTAATTTTTTACAACC
ATCGTCATCAATAAAATCAAAATTGGAATTTAAATCACCAATTGAAATTAAGATGATGAA
GCCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATC
ATCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGC
ACCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATT
GTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACC
ACCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTC
AGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGG
TTGTACTGGTCNNNNNNNNNN
Length of 5' end seq. 561
3' end seq. ID CFI104Z
3' end seq. 
>CFI104Z.Seq
NNNNNNNNNNCTAAATTATTGGAGATTGCACAAGTACCATCATCAAAGGTTGAAGAATTT
AAATCAATAAAGAAATTCAAAATTTTTAATACCAATAACATTTGGGTCAATCTCAAAGCA
ATGGATCGTATTTTGAAACAAAATCTTTTGGATGATATGGATATCATTATCAATCCAAAG
GTTGCTGATGGTAAAAATATCATTCAATTGGAGATTGCTGCTGGTGCTGCAATTGAATTC
TTTAACAATGCAAGAGGTGTCAATGTACCAAGATCAAGATTTTTACCAGTGAAATCAACC
TCTGATCTCTTTATCGTTCAATCAAATCTCTACTCACTCGAGAAGGGTGTTTTGGTAATG
AACAAGAATAGACCATTCACCACAGTTCCCTTGGTTAAATTGGGTGATAACTTTAAAAAG
GTTTCAGATTATCAAGCTCGTATCAAAGGTATTCCAGATATTTTGGAATTGGATCAACTC
ACCGTTTCTGGTGATATAACCTTTGGTCCAAATATGGTCCTCAAAGGCACTGTTATCATT
GTTGCTAATCAGGTTCAAGAATTATATTCCNAAGGTTCAGAATTNAAAATAAAGAGTTAG
GGNATTTACATTG
Length of 3' end seq. 613
Connected seq. ID CFI104P
Connected seq. 
>CFI104P.Seq
ATAAAAGACTTTGAAAATAACAATCAAATCAATTATAACAATTATTAAAAACAAAAAGAT
ATTTTGTTTTTTCTTGTTTTCTTTATTCACATTACTATTTCAATTTAATTTTTTACAACC
ATCGTCATCAATAAAATCAAAATTGGAATTTAAATCACCAATTGAAATTAAGATGATGAA
GCCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATC
ATCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGC
ACCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATT
GTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACC
ACCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTC
AGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAACAATGGG
TTGTACTGGTC----------CTAAATTATTGGAGATTGCACAAGTACCATCATCAAAGG
TTGAAGAATTTAAATCAATAAAGAAATTCAAAATTTTTAATACCAATAACATTTGGGTCA
ATCTCAAAGCAATGGATCGTATTTTGAAACAAAATCTTTTGGATGATATGGATATCATTA
TCAATCCAAAGGTTGCTGATGGTAAAAATATCATTCAATTGGAGATTGCTGCTGGTGCTG
CAATTGAATTCTTTAACAATGCAAGAGGTGTCAATGTACCAAGATCAAGATTTTTACCAG
TGAAATCAACCTCTGATCTCTTTATCGTTCAATCAAATCTCTACTCACTCGAGAAGGGTG
TTTTGGTAATGAACAAGAATAGACCATTCACCACAGTTCCCTTGGTTAAATTGGGTGATA
ACTTTAAAAAGGTTTCAGATTATCAAGCTCGTATCAAAGGTATTCCAGATATTTTGGAAT
TGGATCAACTCACCGTTTCTGGTGATATAACCTTTGGTCCAAATATGGTCCTCAAAGGCA
CTGTTATCATTGTTGCTAATCAGGTTCAAGAATTATATTCCNAAGGTTCAGAATTNAAAA
TAAAGAGTTAGGGNATTTACATTG
Length of connected seq. 1154
Full length Seq ID -
Full length Seq. -
Length of full length seq. -