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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH888
Library CF
(Link to library)
Clone ID CFH888
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFH888 (CFH888Q) /CSM/CF/CFH8-D/CFH888Q.Seq.d/
XXXXXXXXXXTCTATGCTGACTCTTTAGCTCGTTACAGTAAATCACCATACATTTATCCA
TTATATGGTTTAGGTGAATTACCACAAGCATTTGCCCGTTTATCTGCTATCTATGGTGGT
ACATATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATT
AAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATAT
TTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGT
CCAATTCCATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAA
GTTAAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCA
AAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAA
TTAGCACCAGCTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGAT
TTCATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGAT
GCTACCTCTCACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACG
GTAAAGATTTAGTTCTCACTGTTCATCCAAATATTCTTAACAACAAGAAGAAGCGGAACC
AAGAACAAGAAGAACA
sequence update 2001.11.22
Translated Amino Acid sequence 
---YADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIK
VTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQV
KRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDF
IEPIADGTADNVFISKSYDATSHFETTCEDVMDMYKRITVKI*fslfiqiflttrrsgtk
nkkn
Translated Amino Acid sequence (All Frames) 
Frame A:
---lc*lfsslq*itihlsiiwfr*ittsicpficylwwyiya**tn*kycfr*rkeny*
syi*r*ncnm**ncl*siifpk*ssker*nysfnlyfewsnsic**ei*itpnhyptkts
*tsiryvrwcyvirslclskg*ihchrfshc*nq*treristslrfirsnsreiclyf*f
h*tnc*wycrqcfhlkii*cylsl*nhl*rchgyvqenhgkdlvltvhpnilnnkkkrnq
eqee


Frame B:
---YADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIK
VTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQV
KRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDF
IEPIADGTADNVFISKSYDATSHFETTCEDVMDMYKRITVKI*fslfiqiflttrrsgtk
nkkn


Frame C:
---mltl*lvtvnhhtfihymv*vnyhkhlpvyllsmvvhiclinqlkilfsmkkrkllk
lhlkvkl*hviklfvihhisqikfkrkvklfvqfvf*mvqfhllirnlnhskslshknkl
nvnqictlvlchplivsvqrvntlpsfqpllkpmnqrkn*hqltly*vqfkrnlsiflis
lnqllmvlptmfssqnhmmlpltlkplvkmswictresr*rfsshcsskys*qqeeaepr
trrt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH888 (CFH888Q) /CSM/CF/CFH8-D/CFH888Q.Seq.d/                       1439   0.0
CFH515 (CFH515Q) /CSM/CF/CFH5-A/CFH515Q.Seq.d/                       1431   0.0
VFJ639 (VFJ639Q) /CSM/VF/VFJ6-B/VFJ639Q.Seq.d/                       1425   0.0
SFL120 (SFL120Q) /CSM/SF/SFL1-A/SFL120Q.Seq.d/                       1402   0.0
AFB514 (AFB514Q) /CSM/AF/AFB5-A/AFB514Q.Seq.d/                       1402   0.0
SFL479 (SFL479Q) /CSM/SF/SFL4-D/SFL479Q.Seq.d/                       1398   0.0
SFL394 (SFL394Q) /CSM/SF/SFL3-D/SFL394Q.Seq.d/                       1396   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                       1388   0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/                       1386   0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/                       1384   0.0
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL408803|AL408803.1 T3 end of clone AV0AA010G06 of library AV0AA from strain CBS 379 ofSaccharomyces exiguus.    54   1e-09  3
AJ005836|AJ005836.1 Cicer arietinum mRNA for GDP dissociation inhibitor (gdi).    38   2e-09  4
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   3e-08  2
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   4e-08  2
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   4e-08  2
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   4e-08  2
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-07  2
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    62   1e-07  2
BZ296562|BZ296562.1 CG2922.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG2922, DNA sequence.    66   8e-07  1
AJ618983|AJ618983.1 Medicago truncatula gdi gene for GDP dissociation inhibitor.    40   2e-06  3
dna update 2004. 2. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   273   3e-72
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia...   272   9e-72
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   272   9e-72
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   272   9e-72
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA.            272   9e-72
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   271   1e-71
(Q8HXX7) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   271   2e-71
(P31150) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   271   2e-71
A54091(A54091;S35964;A37996)rab GDP dissociation inhibitor alpha...   271   2e-71
AB171705_1(AB171705|pid:none) Macaca fascicularis brain cDNA clo...   271   2e-71
protein update 2009. 5.15
PSORT 

 psg: 0.85  gvh: 0.62  alm: 0.47  top: 0.60  tms: 0.00  mit: 0.29  mip: 0.06
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 24.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CFH888 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFH888Z
3' end seq. 
>CFH888Z.Seq
NNNNNNNNNNTCTATGCTGACTCTTTAGCTCGTTACAGTAAATCACCATACATTTATCCA
TTATATGGTTTAGGTGAATTACCACAAGCATTTGCCCGTTTATCTGCTATCTATGGTGGT
ACATATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATT
AAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATAT
TTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGT
CCAATTCCATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAA
GTTAAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCA
AAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAA
TTAGCACCAGCTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGAT
TTCATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGAT
GCTACCTCTCACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACG
GTAAAGATTTAGTTCTCACTGTTCATCCAAATATTCTTAACAACAAGAAGAAGCGGAACC
AAGAACAAGAAGAACA
Length of 3' end seq. 736
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -