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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH861
Library CF
(Link to library)
Clone ID CFH861
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12597-1|Contig-U16287-1
Original site URL
Representative seq. ID CFH861P
(Link to Original site)
Representative DNA sequence 
>CFH861 (CFH861Q) /CSM/CF/CFH8-C/CFH861Q.Seq.d/
TTTAATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAANGGGNCCTTTTTTTNNNNAAAANAXXXXXXXXXXATGT
TAAAGGAATTTCAGAAGCTTTGGATAAATTTGAAAAAGAAACCGGACCTTGATATACCAA
TTCATGTCGATACAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTT
GGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTAT
CTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGG
TATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTC
CAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATA
CCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAAC
ACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAAT
TGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATA
GAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCATAG
sequence update 2001.11.22
Translated Amino Acid sequence 
LIKLFLSFNIYISLEKKKKKKKKKKKKXXLFXXKX---

---MLKEFQKLWINLKKKPDLDIPIHVDTASGGFVAPFLQPEIVWDFRLPRVKSINGSGH
KFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHG
RSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSD
RMRNRGWQIASYTLPNLPDIVVH
Translated Amino Acid sequence (All Frames) 
Frame A:
fnkiisfi*ylykfgkkkkkkkkkkkkxgpffxxx---

---MLKEFQKLWINLKKKPDLDIPIHVDTASGGFVAPFLQPEIVWDFRLPRVKSINGSGH
KFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHG
RSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSD
RMRNRGWQIASYTLPNLPDIVVH

Frame B:
LIKLFLSFNIYISLEKKKKKKKKKKKKXXLFXXKX---

---c*rnfrsfg*i*krnrtliyqfmsiqqvvvslhpffnqklfgildyhvlnqlmalvi
nlvylhwelagsygevkmtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamv
vvdipqfiklv*imvfsfpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqi
e*eievgklhpilyqtyqil*fi

Frame C:
**nyffhlifi*vwkkkkkkkkkkkkxgxffxxk---

---vkgisealdkfeketgp*ytnscryskwwfrctlsstrnclgf*tttc*in*wlws*
iwsisigswlgrmer*k*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws
*wiyrsssslsrswyfhfqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*
nek*rlancilystkltrycss*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH861 (CFH861Q) /CSM/CF/CFH8-C/CFH861Q.Seq.d/                       1193   0.0
AFO558 (AFO558Q) /CSM/AF/AFO5-C/AFO558Q.Seq.d/                       1179   0.0
SFK692 (SFK692Q) /CSM/SF/SFK6-D/SFK692Q.Seq.d/                       1178   0.0
CFK133 (CFK133Q) /CSM/CF/CFK1-B/CFK133Q.Seq.d/                       1178   0.0
SFL435 (SFL435Q) /CSM/SF/SFL4-B/SFL435Q.Seq.d/                       1170   0.0
AFK548 (AFK548Q) /CSM/AF/AFK5-B/AFK548Q.Seq.d/                       1168   0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1164   0.0
SFG754 (SFG754Q) /CSM/SF/SFG7-C/SFG754Q.Seq.d/                       1164   0.0
SFE561 (SFE561Q) /CSM/SF/SFE5-C/SFE561Q.Seq.d/                       1164   0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/                       1164   0.0
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clonecLPP11A1 5' sequence, mRNA sequence.    58   2e-07  2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence.    62   2e-06  2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    50   4e-05  2
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence.    42   4e-05  2
AR375678|AR375678.1 Sequence 684 from patent US 6605709.           46   5e-05  3
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    56   1e-04  2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    56   1e-04  2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    56   1e-04  2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence.    56   1e-04  2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence.    56   1e-04  2
dna update 2004. 2. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   276   6e-74
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   273   5e-73
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   268   1e-71
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   271   2e-71
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   270   4e-71
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   260   3e-68
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   252   2e-66
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   251   2e-65
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   248   2e-64
CP000937_903(CP000937|pid:none) Francisella philomiragia subsp. ...   243   2e-64
protein update 2009. 5.15
PSORT 

 psg: 0.87  gvh: 0.39  alm: 0.44  top: 1.13  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.39  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: cytoplasmic

>> prediction for CFH861 is nuc
5' end seq. ID CFH861F
5' end seq. 
>CFH861F.Seq
TTTAATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAANGGGNCCTTTTTTTNNNNAAAANANNNNNNNNNN
Length of 5' end seq. 116
3' end seq. ID CFH861Z
3' end seq. 
>CFH861Z.Seq
NNNNNNNNNNATGTTAAAGGAATTTCAGAAGCTTTGGATAAATTTGAAAAAGAAACCGGA
CCTTGATATACCAATTCATGTCGATACAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCA
ACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCA
TAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACAT
TCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATT
GAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGG
TCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAA
GCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGG
TGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGA
TAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATAT
TGTAGTTCATAG
Length of 3' end seq. 612
Connected seq. ID CFH861P
Connected seq. 
>CFH861P.Seq
TTTAATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAANGGGNCCTTTTTTTNNNNAAAANA----------ATGT
TAAAGGAATTTCAGAAGCTTTGGATAAATTTGAAAAAGAAACCGGACCTTGATATACCAA
TTCATGTCGATACAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTT
GGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTAT
CTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGG
TATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTC
CAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATA
CCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAAC
ACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAAT
TGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATA
GAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCATAG
Length of connected seq. 708
Full length Seq ID -
Full length Seq. -
Length of full length seq. -