>CFH668 (CFH668Q) /CSM/CF/CFH6-C/CFH668Q.Seq.d/
XXXXXXXXXXTTACTCAAGATCCAATTCAAGATTCTACTTTATTTGAACCTTTTGTATTA
AAGAATTATATCGATTCAATTCCATCATTATCAACTAAATTAACTTCAAATGGTGATTGT
TTAAATAATGGTAATAGTAATAATAATAACAACAACAATAGTAAGGATACATCATTTATA
GGTTTTTCAAGAGAACAAATTAAAACATTTTTAGAATTTGATGATCAAGATGCAAATTTT
TTATNTCAAGATTATTTTTATAGTAACTGTAATAATAATAATAATAATGTAAATGATGGT
GATGATTTGGTTAACAACTGTAAAAACCTTTTAAACAATANATGGTTAGTGATCACTGGT
TTACCAAACCAATTACCTGCTTTTGTAATGTTAACATCCCAACTCATTATGAATAGAAGT
GAATTACATTTCCCTGTATCAATCAACAACTATCAAAAGAATGAGATAGATGTAAATGTT
TATGGAATTTATCCATTACCAAATATTGCAATTCAATCATAAAATCAATCAAATATAATC
AATTAACAAACAACAAAGTTTATCAATACATCAATTATTTTTTTTTTATACTTNATTTAT
TTTTAAATATCTTCTTTTTTTTTATATAATATCAATAATTCAAANAAAAAA

---TQDPIQDSTLFEPFVLKNYIDSIPSLSTKLTSNGDCLNNGNSNNNNNNNSKDTSFIG
FSREQIKTFLEFDDQDANFLXQDYFYSNCNNNNNNVNDGDDLVNNCKNLLNNXWLVITGL
PNQLPAFVMLTSQLIMNRSELHFPVSINNYQKNEIDVNVYGIYPLPNIAIQS*nqsniin
*qttkfintsiifflyxiyf*issfflyninnsxkk

Frame A:
---ysrsnsrfyfi*tfcikelyrfnsiiin*infkw*lfk*w******qqq**gyiiyr
ffkrtn*nifri**srckffxsrlfl**l******ck*w**fg*ql*kpfkqxmvsdhwf
tkpitcfcnvnipthye*k*itfpcinqqlske*drckclwnlsitkycnsiiksikynq
ltnnkvyqyinyfffilxlflniffffi*yq*fkxk


Frame B:
---TQDPIQDSTLFEPFVLKNYIDSIPSLSTKLTSNGDCLNNGNSNNNNNNNSKDTSFIG
FSREQIKTFLEFDDQDANFLXQDYFYSNCNNNNNNVNDGDDLVNNCKNLLNNXWLVITGL
PNQLPAFVMLTSQLIMNRSELHFPVSINNYQKNEIDVNVYGIYPLPNIAIQS*nqsniin
*qttkfintsiifflyxiyf*issfflyninnsxkk


Frame C:
---lkiqfkillylnlly*riisiqfhhyqln*lqmviv*imviviiitttivrihhl*v
fqenklkhf*nlmikmqifyxkiifivtviiiiim*mmvmiwlttvktf*tixg**slvy
qtnylll*c*hpnsl*ievnyislyqsttikrmr*m*mfmefihyqilqfnhkinqi*si
nkqqslsihqlfffytxfifkyllffyiisiiqxk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH668 (CFH668Q) /CSM/CF/CFH6-C/CFH668Q.Seq.d/                        507   e-143
SFD356 (SFD356Q) /CSM/SF/SFD3-C/SFD356Q.Seq.d/                        482   e-135
AFK240 (AFK240Q) /CSM/AF/AFK2-B/AFK240Q.Seq.d/                        478   e-134
SFJ556 (SFJ556Q) /CSM/SF/SFJ5-C/SFJ556Q.Seq.d/                        476   e-133
SFD438 (SFD438Q) /CSM/SF/SFD4-B/SFD438Q.Seq.d/                        468   e-131
VFL634 (VFL634Q) /CSM/VF/VFL6-B/VFL634Q.Seq.d/                        460   e-128
AFM735 (AFM735Q) /CSM/AF/AFM7-B/AFM735Q.Seq.d/                        446   e-124
VSE846 (VSE846Q) /CSM/VS/VSE8-B/VSE846Q.Seq.d/                        436   e-121
SSG811 (SSG811Q) /CSM/SS/SSG8-A/SSG811Q.Seq.d/                        436   e-121
AFJ378 (AFJ378Q) /CSM/AF/AFJ3-D/AFJ378Q.Seq.d/                        426   e-118

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.    58   1e-11  6
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    46   2e-10  6
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    50   6e-10  9
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    44   9e-10  6
CK417372|CK417372.1 AUF_IpInt_56_d19 Intestine cDNA library Ictalurus punctatus cDNA 5', mRNA sequence.    50   1e-09  2
AC101873|AC101873.2 Mus musculus clone RP23-360O18, WORKING DRAFT SEQUENCE, 19 unordered pieces.    68   2e-09  8
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    50   9e-09  7
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    46   9e-09  7
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    44   2e-08  7
AC079524|AC079524.1 Mus musculus clone RP23-315C20, WORKING DRAFT SEQUENCE, 67 unordered pieces.    54   2e-08  7

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 590,544,778

 psg: 0.75  gvh: 0.40  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CFH668 is cyt

>CFH668Z.Seq
NNNNNNNNNNTTACTCAAGATCCAATTCAAGATTCTACTTTATTTGAACCTTTTGTATTA
AAGAATTATATCGATTCAATTCCATCATTATCAACTAAATTAACTTCAAATGGTGATTGT
TTAAATAATGGTAATAGTAATAATAATAACAACAACAATAGTAAGGATACATCATTTATA
GGTTTTTCAAGAGAACAAATTAAAACATTTTTAGAATTTGATGATCAAGATGCAAATTTT
TTATNTCAAGATTATTTTTATAGTAACTGTAATAATAATAATAATAATGTAAATGATGGT
GATGATTTGGTTAACAACTGTAAAAACCTTTTAAACAATANATGGTTAGTGATCACTGGT
TTACCAAACCAATTACCTGCTTTTGTAATGTTAACATCCCAACTCATTATGAATAGAAGT
GAATTACATTTCCCTGTATCAATCAACAACTATCAAAAGAATGAGATAGATGTAAATGTT
TATGGAATTTATCCATTACCAAATATTGCAATTCAATCATAAAATCAATCAAATATAATC
AATTAACAAACAACAAAGTTTATCAATACATCAATTATTTTTTTTTTATACTTNATTTAT
TTTTAAATATCTTCTTTTTTTTTATATAATATCAATAATTCAAANAAAAAA