CFH624
Library CF
(Link to library)
Clone ID CFH624
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13873-1
Original site URL
Representative seq. ID CFH624P
(Link to Original site)
Representative DNA sequence
>CFH624 (CFH624Q) /CSM/CF/CFH6-A/CFH624Q.Seq.d/
AAAAAATGAGTATTGAATAAATTAAAGCTAGAGAAATTTTGGATAGTAGAGGTAATCCAA
CATTAGAAGTTGAAGTATGGACAAGTGAAGGAATGTTTTCAGCCAAAGTACCAAGTGGAG
CATCAACTGGTATTCATGAAGCATTTGAATTAAGAGATGGTGATAAAAGTCGTTATTTTG
GATATGGTGTTTTGAATGCAATTGTTAATGTAAATAATTTAATATCACCAACATTGAAAG
GTATGAGAGTTGATAATCAAAAAGCAATAGATGATAAAATGATTGAATTGGATGGTACAA
AGAATAAATCAAAACTTGGGTCCAATGCAATCGTTGGTGTATCAATGGCAGTGGCAAGAG
CAGCCGCTTCTATTAAAGGTGTGCCCTTGTACCGTTACATTTCACAATTGGCTGGAAATA
GTAATATTCGTTTACCAGTACCATGTTTTAATGTTATTAATGGTGGAAAACATGCAGGTA
ATAGACTACCATTTCAAGAGTTTATGCTAGTACCCATTGGTGCACCAAAATTTAAAGAAG
CATTGCGTTATGGTTCAGAAGTCTACCATTCACTCAAAGAGATCATCAAGGAAAGATATG
GTTTGGATGCTACAAATGTTGGAGATGAAXXXXXXXXXXTGGATGCTATCAATCATTCGG
GCTATCAAGATGTTATTAAAATTGGTATTGATTCTGCTGCTTCAGAATTTTGGAATCCAA
AGACTTCAAAATATGATATGGATTTCAAGAATATAGGATCCTCACATTTGAAGTCTAGTT
TAAATAGTGGTGAGCAATTAATGTCTAGATATTTAGAGATTTTAAAAAAGTATCCAATTG
CATTCTTTGAAGATCCATTTGGTGAAGATGATTGGGAAAATCATGGTAAAATTACAGCTG
CAATTGGTAATAAAATTCAAATCATTGGTGATGATTTACTTTGTACAAATCCAGAAAGAA
TTAAAAAAGCAATTTCTGAGAAAACTGTAAATTCATTATTATTGAAAATAAATCAAATCG
GTACACTAACTGAAACTATTGAAGCTGCAAAACTTGCAAAAGAAGCTGGTTGGGGTTGTT
TAGTTAGTCATCGTTCAGGTGAAACTGATGATCATTTCATTGCTGATCTTGTAGTTGGTC
TTGGTACTGGTGAAATAAAATCTGGTGCACCTTGTAGATTTGAAAGATTATCAAAATATA
ATAGATTAATGAAAATTGAAGAAGAACTNAAAAACTTCATAGATCAAATGGTAATTCATT
TGAGTATGCTGGTAAGAGTTTTATCATTTTAATAAAAATAAAAAAAAATTAAAAAATAAA
AAAAA
sequence update 2001.11.22
Translated Amino Acid sequence
kmsie*IKAREILDSRGNPTLEVEVWTSEGMFSAKVPSGASTGIHEAFELRDGDKSRYFG
YGVLNAIVNVNNLISPTLKGMRVDNQKAIDDKMIELDGTKNKSKLGSNAIVGVSMAVARA
AASIKGVPLYRYISQLAGNSNIRLPVPCFNVINGGKHAGNRLPFQEFMLVPIGAPKFKEA
LRYGSEVYHSLKEIIKERYGLDATNVGDE---

---DAINHSGYQDVIKIGIDSAASEFWNPKTSKYDMDFKNIGSSHLKSSLNSGEQLMSRY
LEILKKYPIAFFEDPFGEDDWENHGKITAAIGNKIQIIGDDLLCTNPERIKKAISEKTVN
SLLLKINQIGTLTETIEAAKLAKEAGWGCLVSHRSGETDDHFIADLVVGLGTGEIKSGAP
CRFERLSKYNRLMKIEEELKNFIDQMVIHLSMLVRVLSF**k*kkikk*kk


Translated Amino Acid sequence (All Frames)
Frame A:
kk*vlnklklekfwiveviqh*klkygqvkecfqpkyqvehqlvfmkhln*emvikvvil
dmvf*mqllm*ii*yhqh*kv*eliikkq*mik*lnwmvqrinqnlgpmqslvyqwqwqe
qplllkvcpctvtfhnwleivifvyqyhvlmllmvenmqvidyhfkslc*yplvhqnlkk
hcvmvqkstihskrssrkdmvwmlqmlem---

---wmlsiiraikmllklvlilllqnfgiqrlqnmiwisri*dphi*slv*ivvsn*cld
i*rf*ksiqlhslkihlvkmigkimvklqlqlvikfkslvmiyfvqiqkelkkqflrkl*
ihyy*k*iksvh*lkllklqnlqkklvgvv*lvivqvklmiisllil*lvlvlvk*nlvh
lvdlkdyqniid**klkknxkts*ikw*fi*vcw*efyhfnknkkklknkk

Frame B:
kney*in*s*rnfg**r*snirs*smdk*rnvfsqstkwsinwys*si*ikrw**kslfw
iwcfecnc*ck*fnitnieryes**sksnr**nd*igwyke*iktwvqcnrwcingsgks
srfy*rcalvplhftigwk**ysftstmf*cy*wwktcr**ttisrvyasthwctki*rs
ialwfrslpftqrdhqgkiwfgcykcwr*---

---gcyqsfglsrcy*nwy*fccfrileskdfki*ygfqeyriltfev*fk*w*ainv*i
frdfkkvsncil*rsiw*r*lgksw*nyscnw**nsnhw**ftlyksrkn*ksnf*enck
fiiienksnrytn*ny*scktckrswlglfs*ssfr*n**sfhc*scswswyw*nkiwct
l*i*kiiki**inen*rrtxklhrsngnsfeyagksfiilikikkn*kikk

Frame C:
kmsie*IKAREILDSRGNPTLEVEVWTSEGMFSAKVPSGASTGIHEAFELRDGDKSRYFG
YGVLNAIVNVNNLISPTLKGMRVDNQKAIDDKMIELDGTKNKSKLGSNAIVGVSMAVARA
AASIKGVPLYRYISQLAGNSNIRLPVPCFNVINGGKHAGNRLPFQEFMLVPIGAPKFKEA
LRYGSEVYHSLKEIIKERYGLDATNVGDE---

---DAINHSGYQDVIKIGIDSAASEFWNPKTSKYDMDFKNIGSSHLKSSLNSGEQLMSRY
LEILKKYPIAFFEDPFGEDDWENHGKITAAIGNKIQIIGDDLLCTNPERIKKAISEKTVN
SLLLKINQIGTLTETIEAAKLAKEAGWGCLVSHRSGETDDHFIADLVVGLGTGEIKSGAP
CRFERLSKYNRLMKIEEELKNFIDQMVIHLSMLVRVLSF**k*kkikk*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFH624 (CFH624Q) /CSM/CF/CFH6-A/CFH624Q.Seq.d/ 2498 0.0
CFK240 (CFK240Q) /CSM/CF/CFK2-B/CFK240Q.Seq.d/ 1279 0.0
CFJ407 (CFJ407Q) /CSM/CF/CFJ4-A/CFJ407Q.Seq.d/ 1273 0.0
SFJ731 (SFJ731Q) /CSM/SF/SFJ7-B/SFJ731Q.Seq.d/ 1261 0.0
CHB680 (CHB680Q) /CSM/CH/CHB6-D/CHB680Q.Seq.d/ 1257 0.0
CHC316 (CHC316Q) /CSM/CH/CHC3-A/CHC316Q.Seq.d/ 1249 0.0
CHB459 (CHB459Q) /CSM/CH/CHB4-C/CHB459Q.Seq.d/ 1241 0.0
AFB731 (AFB731Q) /CSM/AF/AFB7-B/AFB731Q.Seq.d/ 1239 0.0
AFO218 (AFO218Q) /CSM/AF/AFO2-A/AFO218Q.Seq.d/ 1237 0.0
SFC671 (SFC671Q) /CSM/SF/SFC6-C/SFC671Q.Seq.d/ 1233 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U09736|U09736.1 Entamoeba histolytica HM1:IMSS enolase (enl-1) mRNA, complete cds. 56 6e-31 6
BM162118|BM162118.1 EST564641 PyBS Plasmodium yoelii yoelii cDNA clone PYCKN41 5' end, mRNA sequence. 70 1e-24 4
BM165201|BM165201.1 EST567724 PyBS Plasmodium yoelii yoelii cDNA clone PYCMI87 5' end, mRNA sequence. 70 2e-24 4
BM166362|BM166362.1 EST568885 PyBS Plasmodium yoelii yoelii cDNA clone PYCNG69 5' end, mRNA sequence. 70 7e-22 3
BD183625|BD183625.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 58 9e-19 6
BD183626|BD183626.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 58 9e-19 6
U00152|U00152.1 Plasmodium falciparum enolase gene complete cds. 58 9e-19 6
AB026051|AB026051.1 Plasmodium falciparum mRNA for enolase, complete cds. 58 9e-19 6
AZ690037|AZ690037.1 ENTKP77TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 6e-18 4
BM161473|BM161473.1 EST563996 PyBS Plasmodium yoelii yoelii cDNA clone PYCKF24 5' end, mRNA sequence. 52 2e-16 4
dna update 2004. 2. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ497988_1(DQ497988|pid:none) Polypterus senegalus enolase B mRN... 468 e-130
(Q27727) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 467 e-130
(Q9U615) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 465 e-129
AM910990_161(AM910990|pid:none) Plasmodium knowlesi strain H chr... 464 e-129
AK290525_1(AK290525|pid:none) Homo sapiens cDNA FLJ77877 complet... 463 e-129
BC054169_1(BC054169|pid:none) Xenopus laevis enolase 1, alpha, m... 463 e-129
(P09104) RecName: Full=Gamma-enolase; EC=4.2.1.11; AltN... 463 e-129
(P17183) RecName: Full=Gamma-enolase; EC=4.2.1.11; AltN... 463 e-129
DQ497985_1(DQ497985|pid:none) Polypterus senegalus enolase A mRN... 462 e-128
(P07323) RecName: Full=Gamma-enolase; EC=4.2.1.11; AltN... 462 e-128
protein update 2009. 5.15
PSORT

psg: 0.61 gvh: 0.44 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for CFH624 is cyt

5' end seq. ID CFH624F
5' end seq.
>CFH624F.Seq
AAAAAATGAGTATTGAATAAATTAAAGCTAGAGAAATTTTGGATAGTAGAGGTAATCCAA
CATTAGAAGTTGAAGTATGGACAAGTGAAGGAATGTTTTCAGCCAAAGTACCAAGTGGAG
CATCAACTGGTATTCATGAAGCATTTGAATTAAGAGATGGTGATAAAAGTCGTTATTTTG
GATATGGTGTTTTGAATGCAATTGTTAATGTAAATAATTTAATATCACCAACATTGAAAG
GTATGAGAGTTGATAATCAAAAAGCAATAGATGATAAAATGATTGAATTGGATGGTACAA
AGAATAAATCAAAACTTGGGTCCAATGCAATCGTTGGTGTATCAATGGCAGTGGCAAGAG
CAGCCGCTTCTATTAAAGGTGTGCCCTTGTACCGTTACATTTCACAATTGGCTGGAAATA
GTAATATTCGTTTACCAGTACCATGTTTTAATGTTATTAATGGTGGAAAACATGCAGGTA
ATAGACTACCATTTCAAGAGTTTATGCTAGTACCCATTGGTGCACCAAAATTTAAAGAAG
CATTGCGTTATGGTTCAGAAGTCTACCATTCACTCAAAGAGATCATCAAGGAAAGATATG
GTTTGGATGCTACAAATGTTGGAGATGAANNNNNNNNNN
Length of 5' end seq. 639
3' end seq. ID CFH624Z
3' end seq.
>CFH624Z.Seq
NNNNNNNNNNTGGATGCTATCAATCATTCGGGCTATCAAGATGTTATTAAAATTGGTATT
GATTCTGCTGCTTCAGAATTTTGGAATCCAAAGACTTCAAAATATGATATGGATTTCAAG
AATATAGGATCCTCACATTTGAAGTCTAGTTTAAATAGTGGTGAGCAATTAATGTCTAGA
TATTTAGAGATTTTAAAAAAGTATCCAATTGCATTCTTTGAAGATCCATTTGGTGAAGAT
GATTGGGAAAATCATGGTAAAATTACAGCTGCAATTGGTAATAAAATTCAAATCATTGGT
GATGATTTACTTTGTACAAATCCAGAAAGAATTAAAAAAGCAATTTCTGAGAAAACTGTA
AATTCATTATTATTGAAAATAAATCAAATCGGTACACTAACTGAAACTATTGAAGCTGCA
AAACTTGCAAAAGAAGCTGGTTGGGGTTGTTTAGTTAGTCATCGTTCAGGTGAAACTGAT
GATCATTTCATTGCTGATCTTGTAGTTGGTCTTGGTACTGGTGAAATAAAATCTGGTGCA
CCTTGTAGATTTGAAAGATTATCAAAATATAATAGATTAATGAAAATTGAAGAAGAACTN
AAAAACTTCATAGATCAAATGGTAATTCATTTGAGTATGCTGGTAAGAGTTTTATCATTT
TAATAAAAATAAAAAAAAATTAAAAAATAAAAAAAA
Length of 3' end seq. 696
Connected seq. ID CFH624P
Connected seq.
>CFH624P.Seq
AAAAAATGAGTATTGAATAAATTAAAGCTAGAGAAATTTTGGATAGTAGAGGTAATCCAA
CATTAGAAGTTGAAGTATGGACAAGTGAAGGAATGTTTTCAGCCAAAGTACCAAGTGGAG
CATCAACTGGTATTCATGAAGCATTTGAATTAAGAGATGGTGATAAAAGTCGTTATTTTG
GATATGGTGTTTTGAATGCAATTGTTAATGTAAATAATTTAATATCACCAACATTGAAAG
GTATGAGAGTTGATAATCAAAAAGCAATAGATGATAAAATGATTGAATTGGATGGTACAA
AGAATAAATCAAAACTTGGGTCCAATGCAATCGTTGGTGTATCAATGGCAGTGGCAAGAG
CAGCCGCTTCTATTAAAGGTGTGCCCTTGTACCGTTACATTTCACAATTGGCTGGAAATA
GTAATATTCGTTTACCAGTACCATGTTTTAATGTTATTAATGGTGGAAAACATGCAGGTA
ATAGACTACCATTTCAAGAGTTTATGCTAGTACCCATTGGTGCACCAAAATTTAAAGAAG
CATTGCGTTATGGTTCAGAAGTCTACCATTCACTCAAAGAGATCATCAAGGAAAGATATG
GTTTGGATGCTACAAATGTTGGAGATGAA----------TGGATGCTATCAATCATTCGG
GCTATCAAGATGTTATTAAAATTGGTATTGATTCTGCTGCTTCAGAATTTTGGAATCCAA
AGACTTCAAAATATGATATGGATTTCAAGAATATAGGATCCTCACATTTGAAGTCTAGTT
TAAATAGTGGTGAGCAATTAATGTCTAGATATTTAGAGATTTTAAAAAAGTATCCAATTG
CATTCTTTGAAGATCCATTTGGTGAAGATGATTGGGAAAATCATGGTAAAATTACAGCTG
CAATTGGTAATAAAATTCAAATCATTGGTGATGATTTACTTTGTACAAATCCAGAAAGAA
TTAAAAAAGCAATTTCTGAGAAAACTGTAAATTCATTATTATTGAAAATAAATCAAATCG
GTACACTAACTGAAACTATTGAAGCTGCAAAACTTGCAAAAGAAGCTGGTTGGGGTTGTT
TAGTTAGTCATCGTTCAGGTGAAACTGATGATCATTTCATTGCTGATCTTGTAGTTGGTC
TTGGTACTGGTGAAATAAAATCTGGTGCACCTTGTAGATTTGAAAGATTATCAAAATATA
ATAGATTAATGAAAATTGAAGAAGAACTNAAAAACTTCATAGATCAAATGGTAATTCATT
TGAGTATGCTGGTAAGAGTTTTATCATTTTAATAAAAATAAAAAAAAATTAAAAAATAAA
AAAAA
Length of connected seq. 1315
Full length Seq ID -
Full length Seq. -
Length of full length seq. -