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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH577
Library CF
(Link to library)
Clone ID CFH577
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFH577P
(Link to Original site)
Representative DNA sequence 
>CFH577 (CFH577Q) /CSM/CF/CFH5-D/CFH577Q.Seq.d/
AAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATCC
ATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATG
GGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAAC
TGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAA
AGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCA
AGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAAT
TTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGG
TTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAAT
GGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTXXXXXXXXXXAATAAAA
AAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGAAACTTT
GTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATNGTAAAGACTGAACTNTTT
GTTCCAATTCTNTACATAATGAAATTCAAAAATNTTGACGATGCTTTTGCCTGGAATAAT
GAAGTCCCNCAAGGTCTNTCATNTTCCCTNTTCACAAACAATCAAAANAATATCTTCAAA
TGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGNAGCTACAAACGGT
GCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAANAGACCGGAGGTGGTANAGAATCNGGC
TCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAATACNATCAACCAAGGTAATACT
ATGCCNTTATCNCAAGGNATCNATTTTACTAAAATTACCNAAAAAAAAAACCAAATG
sequence update 2001.11.22
Translated Amino Acid sequence 
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITA---

---IKKQGGKVVIGGNKLDISGGNFVEPTVVAIEHDAPXVKTELFVPILYIMKFKNXDDA
FAWNNEVPQGLSXSLFTNNQXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGEKXTGG
GXESGSDSWKQYCRRXTNTINQGNTMPLSQGIXFTKITXKKNQM
Translated Amino Acid sequence (All Frames) 
Frame A:
kktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycn
c*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*n
lh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhyc---

---nkkarw*grhww**tryqwwklc*tnrrch*t*csnxkd*txcsnsxhneiqkx*rc
fcle**spxrsxxfpxhkqskxylqmawtyri*lwys*rkxsykrc*nwwxxwr*kxdrr
wxrixlrqletvlps*x*yxqpr*yyaxixrxxfy*nyxkkkpn

Frame B:
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITA---

---IKKQGGKVVIGGNKLDISGGNFVEPTVVAIEHDAPXVKTELFVPILYIMKFKNXDDA
FAWNNEVPQGLSXSLFTNNQXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGEKXTGG
GXESGSDSWKQYCRRXTNTINQGNTMPLSQGIXFTKITXKKNQM

Frame C:
knif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllql
levlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvkf
tlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvsll---

---*kskvvrsslvvinsisvvetllnqpslplnmmlqx*rlnxlfqfxt**nskxltml
lpgimksxkvxhxpxsqtikxissngldlpdltvv*lt*mxlqtvlklvxplevkxrpev
vxnxaqtagnsiavvxlixstkvilcxyxkxsillklpkkktk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO793 (VFO793Q) /CSM/VF/VFO7-D/VFO793Q.Seq.d/                       1023   0.0
VFN595 (VFN595Q) /CSM/VF/VFN5-D/VFN595Q.Seq.d/                       1023   0.0
VFN466 (VFN466Q) /CSM/VF/VFN4-C/VFN466Q.Seq.d/                       1023   0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/                       1023   0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1023   0.0
VFJ233 (VFJ233Q) /CSM/VF/VFJ2-B/VFJ233Q.Seq.d/                       1023   0.0
VFJ183 (VFJ183Q) /CSM/VF/VFJ1-D/VFJ183Q.Seq.d/                       1023   0.0
VFI491 (VFI491Q) /CSM/VF/VFI4-D/VFI491Q.Seq.d/                       1023   0.0
VFI240 (VFI240Q) /CSM/VF/VFI2-B/VFI240Q.Seq.d/                       1023   0.0
VFG476 (VFG476Q) /CSM/VF/VFG4-D/VFG476Q.Seq.d/                       1023   0.0
own update 2001.11.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   660   0.0    7
CB209980|CB209980.1 OML00260 Oryza minuta HybriZAP-2.1 XR library Oryza minuta cDNA 5', mRNA sequence.    56   4e-06  2
BU111535|BU111535.1 603126401F1 CSEQCHL13 Gallus gallus cDNA clone ChEST96a2 5', mRNA sequence.    42   2e-05  3
CD733534|CD733534.1 4045967 1GAL - Chicken Intestinal Lymphocyte Gallus gallus cDNA clone 1GAL_17H10 5', mRNA sequence.    42   3e-05  3
BG711333| (S74728) antiquitin=26g turgor protein homolog [human, kidney, Peptide, 511 aa] [Homo sapiens]G, mRNA sequence.    42   3e-05  3
BU488446|BU488446.1 604125245F1 CSEQRBN36 Gallus gallus cDNA clone ChEST943i12 5', mRNA sequence.    42   3e-05  3
BU319046|BU319046.1 603486759F1 CSEQCHN62 Gallus gallus cDNA clone ChEST382f16 5', mRNA sequence.    42   3e-05  3
BU406760|BU406760.1 604140323F1 CSEQCHN59 Gallus gallus cDNA clone ChEST972m5 5', mRNA sequence.    42   3e-05  3
BU106121|BU106121.1 603006693F1 CSEQCHL01 Gallus gallus cDNA clone ChEST25i24 5', mRNA sequence.    42   4e-05  3
BU491071|BU491071.1 604128885F1 CSEQRBN37 Gallus gallus cDNA clone ChEST952i22 5', mRNA sequence.    42   4e-05  3
dna update 2004. 2. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   329   1e-88
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   199   1e-49
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   193   7e-48
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   191   4e-47
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   190   7e-47
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   189   1e-46
AK160117_1(AK160117|pid:none) Mus musculus osteoclast-like cell ...   186   1e-45
(Q9DBF1) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   186   1e-45
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   185   2e-45
AK145873_1(AK145873|pid:none) Mus musculus 14 days embryo liver ...   185   2e-45
protein update 2009. 5.15
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CFH577 is cyt
5' end seq. ID CFH577F
5' end seq. 
>CFH577F.Seq
AAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATCC
ATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATG
GGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAAC
TGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAA
AGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCA
AGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAAT
TTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGG
TTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAAT
GGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTNNNNNNNNNN
Length of 5' end seq. 533
3' end seq. ID CFH577Z
3' end seq. 
>CFH577Z.Seq
NNNNNNNNNNAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATA
TCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATNG
TAAAGACTGAACTNTTTGTTCCAATTCTNTACATAATGAAATTCAAAAATNTTGACGATG
CTTTTGCCTGGAATAATGAAGTCCCNCAAGGTCTNTCATNTTCCCTNTTCACAAACAATC
AAAANAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAA
ATGNAGCTACAAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAANAGACCGGAG
GTGGTANAGAATCNGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAATACNA
TCAACCAAGGTAATACTATGCCNTTATCNCAAGGNATCNATTTTACTAAAATTACCNAAA
AAAAAAACCAAATG
Length of 3' end seq. 494
Connected seq. ID CFH577P
Connected seq. 
>CFH577P.Seq
AAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATCC
ATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATG
GGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAAC
TGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAA
AGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCA
AGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAAT
TTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGG
TTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAAT
GGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCT----------AATAAAA
AAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGAAACTTT
GTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATNGTAAAGACTGAACTNTTT
GTTCCAATTCTNTACATAATGAAATTCAAAAATNTTGACGATGCTTTTGCCTGGAATAAT
GAAGTCCCNCAAGGTCTNTCATNTTCCCTNTTCACAAACAATCAAAANAATATCTTCAAA
TGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGNAGCTACAAACGGT
GCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAANAGACCGGAGGTGGTANAGAATCNGGC
TCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAATACNATCAACCAAGGTAATACT
ATGCCNTTATCNCAAGGNATCNATTTTACTAAAATTACCNAAAAAAAAAACCAAATG
Length of connected seq. 1007
Full length Seq ID -
Full length Seq. -
Length of full length seq. -