AFE751
Library AF
(Link to library)
Clone ID AFE751
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID AFE751F
(Link to Original site)
Representative DNA sequence
>AFE751 (AFE751Q) /CSM/AF/AFE7-C/AFE751Q.Seq.d/
CATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTT
AACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAA
TGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGA
ACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGT
TACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAG
AACACCAATCTTGACCCGTTTCTNTACTGTTGGTGGTGAAAAAGGNTCATCCGATTCTGA
AAGAGAXXXXXXXXXX
sequence update 2001. 6. 2
Translated Amino Acid sequence
iyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE
RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPILTRFXTVGGEKGSSDSE
R---


Translated Amino Acid sequence (All Frames)
Frame A:
hifylgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsfrs*
typrtcctc*rcwcpwlfrsylk*ctkmv*s*ilk*sw*entnldpflycww*krxirf*
k---


Frame B:
iyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE
RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPILTRFXTVGGEKGSSDSE
R---


Frame C:
yilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linllisivn
vsqnvlymlkvlvpmvisklpqvmyqngvklns*iklvrehqs*pvsxllvvkkxhpilk
e---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFE751 (AFE751Q) /CSM/AF/AFE7-C/AFE751Q.Seq.d/ 626 e-179
VSD165 (VSD165Q) /CSM/VS/VSD1-C/VSD165Q.Seq.d/ 618 e-176
VFN609 (VFN609Q) /CSM/VF/VFN6-A/VFN609Q.Seq.d/ 618 e-176
VFM644 (VFM644Q) /CSM/VF/VFM6-B/VFM644Q.Seq.d/ 618 e-176
VFF539 (VFF539Q) /CSM/VF/VFF5-B/VFF539Q.Seq.d/ 618 e-176
VFC407 (VFC407Q) /CSM/VF/VFC4-A/VFC407Q.Seq.d/ 618 e-176
VFA796 (VFA796Q) /CSM/VF/VFA7-D/VFA796Q.Seq.d/ 618 e-176
VFA635 (VFA635Q) /CSM/VF/VFA6-B/VFA635Q.Seq.d/ 618 e-176
VFA593 (VFA593Q) /CSM/VF/VFA5-D/VFA593Q.Seq.d/ 618 e-176
SFK359 (SFK359Q) /CSM/SF/SFK3-C/SFK359Q.Seq.d/ 618 e-176

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 611 e-175 2
AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 618 e-173 1
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 60 6e-15 3
AP004595|AP004595.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. 70 2e-08 1
AX338071|AX338071.1 Sequence 11 from Patent WO0193669. 68 1e-07 1
AX329299|AX329299.1 Sequence 1 from Patent WO0194627. 68 1e-07 1
AJ005939|AJ005939.1 Methanosarcina barkeri kat gene. 68 1e-07 1
CK577088|CK577088.1 IST_WI5_15556 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to Y54G11A.13, mRNA sequence. 68 1e-07 1
AL034488|AL034488.2 Caenorhabditis elegans YAC Y54G11A. 68 1e-07 1
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 68 1e-07 1
dna update 2004. 5. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 214 5e-55
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 160 2e-38
(Q9XZD5) RecName: Full=Peroxisomal catalase; EC=1.11.1.... 146 2e-34
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 145 3e-34
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 145 3e-34
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 144 9e-34
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 143 2e-33
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 142 4e-33
Y14065_2(Y14065|pid:none) Caenorhabditis elegans cat1 gene and c... 139 2e-32
T27177(T27177;T27171;S49452)catalase (EC 1.11.1.6) Y54G11A.5b - ... 139 2e-32
protein update 2009. 4.19
PSORT

psg: 0.89 gvh: 0.57 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: extracellular, including cell wall
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for AFE751 is cyt

5' end seq. ID AFE751F
5' end seq.
>AFE751F.Seq
CATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTT
AACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAA
TGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGA
ACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGT
TACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAG
AACACCAATCTTGACCCGTTTCTNTACTGTTGGTGGTGAAAAAGGNTCATCCGATTCTGA
AAGAGA----------
Length of 5' end seq. 366
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -