CFH557
Library CF
(Link to library)
Clone ID CFH557
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFH557 (CFH557Q) /CSM/CF/CFH5-C/CFH557Q.Seq.d/
TGTAGTATTTTGTTNATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAA
ATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAA
AAXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
vvfcxysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
csilxifklnintikks*n*ickinl*qklvi*kkknqkk---


Frame B:
vvfcxysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Frame C:
*yfvxiqikyqyn*kklklnl*nqfvtktsnlkkkkpkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/ 145 2e-34
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/ 145 2e-34
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/ 145 2e-34
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/ 145 2e-34
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/ 145 2e-34
SFL210 (SFL210Q) /CSM/SF/SFL2-A/SFL210Q.Seq.d/ 145 2e-34
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/ 145 2e-34
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/ 145 2e-34
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/ 145 2e-34
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/ 145 2e-34

own update 2002.11.18
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 80 3e-28 3
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 7e-28 2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 80 1e-25 6
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 1e-25 2
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 80 8e-12 1
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 78 3e-11 1
AC137670|AC137670.5 Medicago truncatula clone mth2-14g3, WORKING DRAFT SEQUENCE, 15 unordered pieces. 28 0.10 9
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING. 46 0.11 1
BM424783|BM424783.1 IpSpn00680 Spleen cDNA library Ictalurus punctatus cDNA 5', mRNA sequence. 28 0.19 3
AF031860|AF031860.1 Rhipicephalus compositus 12S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence. 40 0.27 2
dna update 2004. 2. 1
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 55,824,634
protein update 2009. 5.15
PSORT -
5' end seq. ID CFH557F
5' end seq.
>CFH557F.Seq
TGTAGTATTTTGTTNATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAA
ATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAAAA
AANNNNNNNNNN
Length of 5' end seq. 132
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -