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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH556
Library CF
(Link to library)
Clone ID CFH556
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFH556 (CFH556Q) /CSM/CF/CFH5-C/CFH556Q.Seq.d/
XXXXXXXXXXAANAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATANATGTGT
TGAAANACGTGGTGGTATCTTAAGTTGTGAATTTGATCCNCCAAGACAACCAAGATCCCT
TGATTGGGCTGAAAATGAAAATNATGATCGTGACTATNATGATCGTGACTATGATGATGA
TGAATATGATGGTGATTATGATGGCCGTGACGGTGNCTATGATGG
sequence update 2001.11.22
Translated Amino Acid sequence 
---KARCDDVECPDFHXCVEXRGGILSCEFDPPRQPRSLDWAENENXDRDYXDRDYDDDE
YDGDYDGRDGXYD
Translated Amino Acid sequence (All Frames) 
Frame A:
---xkqdvmmsnvqisixvlkxvvvs*vvnlixqdnqdpliglkmkxmivtxmivtmmmm
nmmvimmavtvxmm


Frame B:
---xskm**crmsrfpxmc*xtwwylkl*i*sxkttkip*lg*k*kx*s*lx*s*l****
i*w*l*wp*rxl*w


Frame C:
---KARCDDVECPDFHXCVEXRGGILSCEFDPPRQPRSLDWAENENXDRDYXDRDYDDDE
YDGDYDGRDGXYD
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ720 (SLJ720Q) /CSM/SL/SLJ7-A/SLJ720Q.Seq.d/                        212   2e-54
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/                        212   2e-54
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/                        212   2e-54
SLI573 (SLI573Q) /CSM/SL/SLI5-D/SLI573Q.Seq.d/                        212   2e-54
SLI384 (SLI384Q) /CSM/SL/SLI3-D/SLI384Q.Seq.d/                        212   2e-54
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        212   2e-54
SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/                        212   2e-54
SLH522 (SLH522Q) /CSM/SL/SLH5-A/SLH522Q.Seq.d/                        212   2e-54
SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/                        212   2e-54
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/                        212   2e-54
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   212   1e-51  1
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   212   1e-51  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   212   1e-51  1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   212   1e-51  1
AQ656767|AQ656767.1 Sheared DNA-21D17.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-21D17, genomic survey sequence.    40   12     1
AQ950783|AQ950783.1 Sheared DNA-52C14.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-52C14, genomic survey sequence.    40   12     1
CA992784|CA992784.1 pAR01C08 pAR Gossypium hirsutum cDNA 5', mRNA sequence.    40   12     1
AL484659|AL484659.1 T. brucei sheared genomic DNA clone 291e02, forward sequence.    40   12     1
dna update 2003.10. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    96   3e-19
protein update 2008.12.28
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFH556 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFH556Z
3' end seq. 
>CFH556Z.Seq
NNNNNNNNNNAANAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATANATGTGT
TGAAANACGTGGTGGTATCTTAAGTTGTGAATTTGATCCNCCAAGACAACCAAGATCCCT
TGATTGGGCTGAAAATGAAAATNATGATCGTGACTATNATGATCGTGACTATGATGATGA
TGAATATGATGGTGATTATGATGGCCGTGACGGTGNCTATGATGG
Length of 3' end seq. 225
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -