>CFH537 (CFH537Q) /CSM/CF/CFH5-B/CFH537Q.Seq.d/
GATCGTTGTTTTAGTGTGAATGGTTTTGGTGGCCACCAACTGTATATTTAATTTTTAATT
ATTATTCATTCATTCATTTTCTTTTCGATTTAATATATAGGAAAATAAAAACAAACAAAA
AGAAAAAGAAAATATAATATAATAATATATAGCGTACAAACATACACATTAAATCAAAAA
ATGAAAATTATATTAATACTGGTTTTGGTATTGGTTGTATCAATAAATGCATTAAATAAT
CAGTTTTTACATATTAGTGATGTACATTACAGTAGCGCAATGAATTCTTTATTATATAAT
GCCTCAGTAATGTGTATTGGACCAACAGTTACAAAAGAATTTGATCACAAAGAACATGAA
GATTTAATTGAAGACACAGAAAGATTAAATTTACCAACAAATGGTTTATATGGAAGATAT
GGTTGTGATACTAATCAATTATTATTAAGTGAAGTAATTTCAGAGATGTTAAACGTTAAT
TCAAATCCAGATTTTATTATATATACTGGTGATGGTGCAGGTCATGGTTTACCAAATGGA
CCATXXXXXXXXXX

drcfsvngfgghqlyi*fliiihsfiffsi*yigk*KQTKRKRKYNIIIYSVQTYTLNQK
MKIILILVLVLVVSINALNNQFLHISDVHYSSAMNSLLYNASVMCIGPTVTKEFDHKEHE
DLIEDTERLNLPTNGLYGRYGCDTNQLLLSEVISEMLNVNSNPDFIIYTGDGAGHGLPNG
P---

Frame A:
drcfsvngfgghqlyi*fliiihsfiffsi*yigk*KQTKRKRKYNIIIYSVQTYTLNQK
MKIILILVLVLVVSINALNNQFLHISDVHYSSAMNSLLYNASVMCIGPTVTKEFDHKEHE
DLIEDTERLNLPTNGLYGRYGCDTNQLLLSEVISEMLNVNSNPDFIIYTGDGAGHGLPNG
P---


Frame B:
ivvlv*mvlvatncifnf*llfihsfsfrfni*enknkqkekenii**yiaykhth*ikk
*kly*ywfwywlyq*mh*iisfyilvmyitvaq*ilyyimpq*cvldqqlqknlitknmk
i*lktqkd*iyqqmvymedmvvilinyy*vk*fqrc*tliqiqillyilvmvqvmvyqmd
---


Frame C:
slf*cewfwwpptvylifnyysfihflfdliyrkiktnkkkkki*ynni*rtnihikskn
enyintgfgigcinkcik*svfty**ctlq*rneffii*clsnvywtnsykri*sqrt*r
fn*rhrkikftnkwfiwkiwl*y*siiik*snfrdvkr*fksrfyyiyw*wcrswftkwt
---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH537 (CFH537Q) /CSM/CF/CFH5-B/CFH537Q.Seq.d/                        779   0.0
SLK676 (SLK676Q) /CSM/SL/SLK6-D/SLK676Q.Seq.d/                         78   2e-13
VHQ342 (VHQ342Q) /CSM/VH/VHQ3-B/VHQ342Q.Seq.d/                         38   0.14
VHO234 (VHO234Q) /CSM/VH/VHO2-B/VHO234Q.Seq.d/                         38   0.14
VHN125 (VHN125Q) /CSM/VH/VHN1-B/VHN125Q.Seq.d/                         38   0.14
VHK850 (VHK850Q) /CSM/VH/VHK8-C/VHK850Q.Seq.d/                         38   0.14
VHK826 (VHK826Q) /CSM/VH/VHK8-B/VHK826Q.Seq.d/                         38   0.14
VHJ564 (VHJ564Q) /CSM/VH/VHJ5-C/VHJ564Q.Seq.d/                         38   0.14
VHI280 (VHI280Q) /CSM/VH/VHI2-D/VHI280Q.Seq.d/                         38   0.14
VHI188 (VHI188Q) /CSM/VH/VHI1-D/VHI188Q.Seq.d/                         38   0.14

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36   4e-05  13
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    32   6e-05  13
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    32   9e-05  14
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    30   0.003  11
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   0.004  11
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P4.    36   0.004  12
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                  38   0.004  8
AP003362|AP003362.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 5/9.    36   0.009  10
AP003190|AP003190.2 Clostridium perfringens str. 13 DNA, complete genome, section 6/10.    38   0.012  9
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   0.014  19

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55GC7) RecName: Full=Sphingomyelinase phosphodiesterase D;    ...   223   3e-57
Z70783_3(Z70783|pid:none) Caenorhabditis elegans Cosmid ZK856, c...    44   0.004
BC149924_1(BC149924|pid:none) Bos taurus sphingomyelin phosphodi...    43   0.006
(Q92485) RecName: Full=Acid sphingomyelinase-like phosphodiester...    39   0.12
AL512288_4(AL512288|pid:none) Human DNA sequence from clone RP11...    39   0.12
Y08134_1(Y08134|pid:none) H.sapiens mRNA for ASM-like phosphodie...    39   0.12
AK301349_1(AK301349|pid:none) Homo sapiens cDNA FLJ56798 complet...    39   0.12
BC091833_1(BC091833|pid:none) Danio rerio zgc:113352, mRNA (cDNA...    38   0.20
AL845421_3(AL845421|pid:none) Zebrafish DNA sequence from clone ...    37   0.26
(P58242) RecName: Full=Acid sphingomyelinase-like phosphodiester...    37   0.44

 psg: 0.85  gvh: 0.77  alm: 0.46  top: 0.20  tms: 0.00  mit: 0.44  mip: 0.03
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: nuclear

>> prediction for CFH537 is exc

>CFH537F.Seq
GATCGTTGTTTTAGTGTGAATGGTTTTGGTGGCCACCAACTGTATATTTAATTTTTAATT
ATTATTCATTCATTCATTTTCTTTTCGATTTAATATATAGGAAAATAAAAACAAACAAAA
AGAAAAAGAAAATATAATATAATAATATATAGCGTACAAACATACACATTAAATCAAAAA
ATGAAAATTATATTAATACTGGTTTTGGTATTGGTTGTATCAATAAATGCATTAAATAAT
CAGTTTTTACATATTAGTGATGTACATTACAGTAGCGCAATGAATTCTTTATTATATAAT
GCCTCAGTAATGTGTATTGGACCAACAGTTACAAAAGAATTTGATCACAAAGAACATGAA
GATTTAATTGAAGACACAGAAAGATTAAATTTACCAACAAATGGTTTATATGGAAGATAT
GGTTGTGATACTAATCAATTATTATTAAGTGAAGTAATTTCAGAGATGTTAAACGTTAAT
TCAAATCCAGATTTTATTATATATACTGGTGATGGTGCAGGTCATGGTTTACCAAATGGA
CCATNNNNNNNNNN