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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH515
Library CF
(Link to library)
Clone ID CFH515
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFH515 (CFH515Q) /CSM/CF/CFH5-A/CFH515Q.Seq.d/
XXXXXXXXXXTCATGATACCATCATGAGAATGAAACTCTATGCTGACTCTTTAGCTCGTT
ACAGTAAATCACCATACATTTATCCATTATATGGTTTAGGTGAATTACCACAAGCATTTG
CCCGTTTATCTGCTATCTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATATTG
TTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTG
ATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTA
TTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAAGAAATTTGAATCAC
TCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTA
TGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTCTCAGCCACTG
TTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAATTC
AAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGACA
ATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACTTTGAAACCACTTGTGAAGATG
TCATGGATATGTACAAGAGAATCACGGTAAAGATTTAGTTCTCACTGTTCATCCAAATAT
TCTTAACAACAAGAAGAAGCGGAACCAAGAACAAGAAGAACA
sequence update 2001.11.22
Translated Amino Acid sequence 
---HDTIMRMKLYADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIV
FDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESL
QIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQ
EKFVYISDFIEPIADGTADNVFISKSYDATSHFETTCEDVMDMYKRITVKI*fslfiqif
lttrrsgtknkkn
Translated Amino Acid sequence (All Frames) 
Frame A:
---HDTIMRMKLYADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIV
FDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESL
QIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQ
EKFVYISDFIEPIADGTADNVFISKSYDATSHFETTCEDVMDMYKRITVKI*fslfiqif
lttrrsgtknkkn


Frame B:
---mips*e*nsmltl*lvtvnhhtfihymv*vnyhkhlpvyllsmvvhiclinqlkilf
smkkrkllklhlkvkl*hviklfvihhisqikfkrkvklfvqfvf*mvqfhllirnlnhs
kslshknklnvnqictlvlchplivsvqrvntlpssqpllkpmnqrkn*hqltly*vqfk
rnlsiflislnqllmvlptmfssqnhmmlpltlkplvkmswictresr*rfsshcsskys
*qqeeaeprtrrt


Frame C:
---*yhhenetlc*lfsslq*itihlsiiwfr*ittsicpficylwwyiya**tn*kycf
r*rkeny*syi*r*ncnm**ncl*siifpk*ssker*nysfnlyfewsnsic**ei*itp
nhyptkts*tsiryvrwcyvirslclskg*ihchrlshc*nq*treristslrfirsnsr
eiclyf*fh*tnc*wycrqcfhlkii*cylsl*nhl*rchgyvqenhgkdlvltvhpnil
nnkkkrnqeqee
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH515 (CFH515Q) /CSM/CF/CFH5-A/CFH515Q.Seq.d/                       1491   0.0
AFB514 (AFB514Q) /CSM/AF/AFB5-A/AFB514Q.Seq.d/                       1445   0.0
SFL479 (SFL479Q) /CSM/SF/SFL4-D/SFL479Q.Seq.d/                       1441   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                       1431   0.0
CFH888 (CFH888Q) /CSM/CF/CFH8-D/CFH888Q.Seq.d/                       1431   0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/                       1427   0.0
VFJ639 (VFJ639Q) /CSM/VF/VFJ6-B/VFJ639Q.Seq.d/                       1417   0.0
AFD453 (AFD453Q) /CSM/AF/AFD4-C/AFD453Q.Seq.d/                       1415   0.0
AFE889 (AFE889Q) /CSM/AF/AFE8-D/AFE889Q.Seq.d/                       1411   0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/                       1403   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL408803|AL408803.1 T3 end of clone AV0AA010G06 of library AV0AA from strain CBS 379 ofSaccharomyces exiguus.    54   1e-09  3
AJ005836|AJ005836.1 Cicer arietinum mRNA for GDP dissociation inhibitor (gdi).    38   2e-09  4
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   4e-08  2
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   4e-08  2
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   4e-08  2
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   4e-08  2
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-07  2
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    62   1e-07  2
BZ296562|BZ296562.1 CG2922.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG2922, DNA sequence.    66   8e-07  1
AJ618983|AJ618983.1 Medicago truncatula gdi gene for GDP dissociation inhibitor.    40   2e-06  3
dna update 2004. 2. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   283   5e-75
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia...   281   2e-74
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   281   2e-74
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   281   2e-74
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA.            281   2e-74
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   280   3e-74
(Q8HXX7) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   280   3e-74
A54091(A54091;S35964;A37996)rab GDP dissociation inhibitor alpha...   280   3e-74
AB171705_1(AB171705|pid:none) Macaca fascicularis brain cDNA clo...   280   3e-74
AY665236_1(AY665236|pid:none) Saimiri boliviensis GDP dissociati...   280   3e-74
protein update 2009. 5.15
PSORT 

 psg: 0.62  gvh: 0.62  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for CFH515 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFH515Z
3' end seq. 
>CFH515Z.Seq
NNNNNNNNNNTCATGATACCATCATGAGAATGAAACTCTATGCTGACTCTTTAGCTCGTT
ACAGTAAATCACCATACATTTATCCATTATATGGTTTAGGTGAATTACCACAAGCATTTG
CCCGTTTATCTGCTATCTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATATTG
TTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTG
ATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTA
TTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAAGAAATTTGAATCAC
TCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTA
TGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTCTCAGCCACTG
TTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAATTC
AAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGACA
ATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACTTTGAAACCACTTGTGAAGATG
TCATGGATATGTACAAGAGAATCACGGTAAAGATTTAGTTCTCACTGTTCATCCAAATAT
TCTTAACAACAAGAAGAAGCGGAACCAAGAACAAGAAGAACA
Length of 3' end seq. 762
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -